22 projects
zarr-vectors-tools
Ingest and export workflows for the Zarr Vectors. Wraps third-party readers/writers (nibabel, laspy, plyfile, networkx, trx-python) on top of zarr-vectors.
nglui
Framework for data-driven generation of neuroglancer states.
zarr-vectors
Python utilities for Zarr Vectors — cloud-native storage for points, lines, streamlines, graphs, and meshes.
DracoPy
Python wrapper for Google's Draco Mesh Compression Library
serra-mesh
Analytical multi-material meshes from voxelized segmentations
caveclient
A client for interacting with the Connectome Annotation Versioning Engine
DynamicAnnotationDB
Annotation Database pendant to the chunkedgraph
emannotationschemas
a service for storing arbitrary annotation data on EM volumes stored in a cloud volume
middle-auth-client
tools for helping web services and users interact with the middle_auth_service via flask and python
render-python
python API client to interact with render databases (see https://github.com/saalfeldlab/render)
meshparty
a service to work with meshes
pcg-skel
Skeletonization using the pychunkedgraph
neuron-morphology
Tools for working with single-neuron morphological reconstructions
imageryclient
Front end tools for composite images for EM connectomics
graphteasar
A python library for running the TEASAR algorithm on spatial graphs for skeletonization.
argschema
"a wrapper for setting up modules that can have parameters specified by command line arguments, json_files, or dictionary objects. Providing a common wrapper for data processing modules."
annotationframeworkclient
a service for interacting with the AnnotationFramework
materializationengine
Combines DynamicAnnotationDB and PyChunkedGraph
dashdataframe
An simplified interface for making dash apps to explore multi-dimensional dataframes with custom link integration and filtering.
neuroglancer-annotation-ui
Neuroglancer python annotation UI framework.
AnalysisDataLink
Tools to query data from the dynamic annotation framework
PyChunkedGraph
Proofreading backend for Neuroglancer
