53 projects
crossbridge
Cardiac crossbridge models
pygscholar
Tool for interacting with google scholar
fenicsx-beat
Library to run cardiac EP simulations
fenicsx-pulse
Next generation cardiac mechanics solver based on FEniCSx
gotranx
A declarative language describing ordinary differential equations
sknm
The Simplified Kirchhoff Network Model for cell-based cardiac and islet electrophysiology
scifem
Scientific tools for finite element methods
circulation
Closed loop blood circulation model in FEniCS
ukb-atlas
Generate meshes from UK Biobank data
cardiac-geometriesx
A python library for cardiac geometries
dolfinx-adjoint
Automatic differentation compatible with DOLFINx
md2static
A CLI tool to convert Markdown to html, PDF or Image using GitHub's API
adios4dolfinx
Checkpointing functionality for DOLFINx meshes/functions with ADIOS2
cardiac-mps
Tools for working with caridac mps files
cardiac-geometries-core
Gmsh files for cardiac geometries
mritk
MRI processing toolkit.
fenicsx-ldrb
Laplace-Dirichlet Rule-based algorithm for assigning myocardial fiber orientations.
ap-features
Package to compute features of traces from action potential models
fenicsx-warp
A python library for cardiac geometries
mri2mesh
Tool for converting labeled MRI data to a mesh
clang-format-docs
Run `clang-format` on C++ code blocks in documentation files
modelparameters
A module providing parameter structure for physical modeling
modelgraph
Tool for extracting dependency graphs from gotran ODE models
simula-repo-review
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cardiac-geometries
A python library for cardiac geometries
ldrb
Laplace-Dirichlet Rule-based algorithm for assigning myocardial fiber orientations.
mesh-converter
Mesh converter from Exodus2 to XDMF
fenics-smart
Spatial Modeling Algorithms for Reactions and Transport (SMART) is a high-performance finite-element-based simulation package for model specification and numerical simulation of spatially-varying reaction-transport processes in biological cells.
mps-motion
Library for tracking motion in cardiac mps data
fenics-pulse
A python library based on FEniCS that aims to solve problems in continuum mechanics, in particular cardiac mechanics
fenics-plotly
A package for plotting FEniCS objects using plotly
fenicsx-growth
Cardiac growth models for FEniCSx
zero-mech
A zero-dimensional mechanics solver
wildmeshing
WildMeshing Bindings
meshio2
I/O for many mesh formats
fenics-beat
Library to run cardiac EP simulations
fenics-pulse2
Cardiac Mechanics simulator
simcardems
Simula Cardiac electromechanics solver
cbcbeat
An adjoint-enabled framework for computational cardiac electrophysiology
fenicsx-plotly
Lightweight library for plotting FEniCS x objects using plotly
tissue-detection
General suite of ODE solvers
odesolver
General suite of ODE solvers
pseudo-ecg
Library to compute pseudo ECG from bidomain and monodomain simulations
fractal-tree
Create a fractal tree over a surface discretized by triangles
pygoss
Python interface to goss - General ODE System Solver
gotran
A declarative language describing ordinary differential equations.
blacken-docs-jb
Run `black` on python code blocks in documentation files (also for jupyterbook)
drug-database
Tool for getting scaling factors from different drugs
dev-fenics-dijitso
Distributed just-in-time building of shared libraries
dev-fenics-fiat
FInite element Automatic Tabulator
dev-fenics-ufl
Unified Form Language
dev-fenics-ffc
The FEniCS Form Compiler
instant2
Instant Inlining of C/C++ in Python
