Skip to main content
Avatar for Genis Bayarri from gravatar.com

Genis Bayarri

Username    gbayarri
Date joined   Joined

27 projects

biobb-mem

Last released

Biobb_mem is a complete code template to promote and facilitate the creation of new Biobbs by the community.

biobb-vs

Last released

Biobb_vs is the Biobb module collection to perform virtual screening studies.

biobb-structure-utils

Last released

biobb_structure_utils is the Biobb module collection to perform basic manipulations on 3d structures.

biobb-pmx

Last released

Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions.

biobb-pdb-tools

Last released

Biobb_pdb_tools is a swiss army knife for manipulating and editing PDB files.

biobb-model

Last released

Biobb_model is the Biobb module collection to check and model 3d structures, create mutations or reconstruct missing atoms.

biobb-io

Last released

Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.

biobb-gromacs

Last released

biobb_gromacs is the Biobb module collection to perform molecular dynamics simulations.

biobb-godmd

Last released

Biobb_godmd is a BioBB category for GOdMD tool (protein conformational transitions).

biobb-dna

Last released

Biobb_dna is a package composed of different analyses for nucleic acid trajectories.

biobb-chemistry

Last released

Biobb_chemistry is the Biobb module collection to perform chemistry over molecular dynamics simulations.

biobb-analysis

Last released

Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.

biobb-amber

Last released

Biobb_amber is a BioBB category for AMBER MD package.

biobb-flexserv

Last released

biobb_flexserv is a BioBB category for biomolecular flexibility studies on protein 3D structures.

biobb-flexdyn

Last released

biobb_flexdyn is a BioBB category for studies on the conformational landscape of native proteins.

biobb-cp2k

Last released

Biobb_cp2k is a BioBB category for CP2K QM package.

biobb-cmip

Last released

biobb_cmip is the Biobb module collection to compute classical molecular interaction potentials.

biobb-common

Last released

Biobb_common is the base package required to use the biobb packages.

biobb-structure-checking

Last released

BioBB_structure_checking performs MDWeb structure checking tool set as a command line utility.

biobb-ml

Last released

Biobb_ml is the Biobb module collection to perform machine learning predictions.

pmx-biobb

Last released

Toolkit for free-energy calculation setup/analysis and biomolecular structure handling

biobb-adapters

Last released

Biobb_adapters is the Biobb module collection to use the building blocks with several workflow managers.

biobb-md

Last released

Deprecated Package: biobb_md is no longer maintained and has been superseded by the biobb_gromacs package. Biobb_md is the Biobb module collection to perform molecular dynamics simulations.

biobb-remote

Last released

Biobb_remote is the Biobb module for remote execution via ssl.

biobb-structure-manager

Last released

BioBB_structure_manager is a library to efficiently load and process biomolecular 3D structures.

biobb

Last released

Biobb module collection.

biobb-wf-mutations

Last released

Lysozyme + Mutations workflow built using BioBB Based on the official Gromacs tutorial: http://www.mdtutorials.com/gmx/lysozyme/01_pdb2gmx.html

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page