12 projects
x-filter
A simple tool to filter BLASTx m8 files using the FAMLI algorithm
bam-filter
A simple tool to filter references from a BAM file using different filter types
aMGSIM
aMGSIM: simulate ancient metagenomes for multiple synthetic communities
track-duplicates
A simple tool to extract reads from a certain taxa from BAM files
get-reads-taxonomy
A simple tool to extract reads from a certain taxa from BAM files
collapse-gtdb-tree
A simple tool to collapse the reference GTDB tree at a scpecific rank
get-read-percid
A simple tool to extract references from BAM files and get read statistics
get-ancient-vf
A simple tool to map ancient reads against VFDB.
dmg-reads
A simple tool to extract damaged reads from BAM files
get-biomes
A simple tool to get biomes related data from MGnify and ENA
derep-genomes
A simple genome de-replication tool with fastANI
refine-contigs
A simple tool to identify and clean misassemblies for ancient metagenomics
