varcode

Last released Jul 3, 2024

Variant annotation in Python

pyensembl

Last released Apr 25, 2024

Python interface to Ensembl reference genome metadata

serializable

Last released Apr 5, 2024

Base class with serialization helpers for user-defined Python objects

datacache

Last released Feb 13, 2024

Helpers for transparently downloading datasets

mhctools

Last released Feb 12, 2024

Python interface to running command-line and web-based MHC binding predictors

gtfparse

Last released Jan 17, 2024

Parsing library for extracting data frames of genomic features from GTF files

isovar

Last released Aug 1, 2023

Determine mutant protein sequences from RN using assembly around variants

vaxrank

Last released Aug 19, 2020

Mutant peptide ranking for personalized cancer vaccines

stancache

Last released Jan 16, 2019

Filecache for stan models

survivalstan

Last released Jan 15, 2019

Library of Stan Models for Survival Analysis

topiary

Last released Feb 26, 2018

Predict cancer epitopes from cancer sequence data

mhcnames

Last released Feb 26, 2018

Python library for MHC nomenclature parsing

pepdata

Last released Feb 26, 2018

Immunological peptide datasets and amino acid properties

stanity

Last released Jan 3, 2018

Helper library for working with Stan models in Python

cohorts

Last released Dec 30, 2017

Utilities for analyzing mutations and neoepitopes in patient cohorts

pepnet

Last released Jul 19, 2017

Neural networks for amino acid sequences

topeology

Last released Nov 11, 2016

Compare epitope homology

pygdc

Last released Sep 27, 2016

Python API for Genomic Data Commons