5 projects
feature-merge
Merge overlapping features of GFF/GTF files.
bampy
Python implementation of htslib supporting BAM, SAM, and BGZF compression
configutator
Maps yaml nodes and command line arguments to python function parameters.
clipoverlap
Clips overlapping regions in read mates of SAM/BAM files.
CigarIterator
Iterates pysam AlignedSegments, managing the different coordinate spaces of the cigar, sequence, MD, and reference.
