Fabio Zanini

scquill

Last released Oct 22, 2024

Approximate any single cell data set, saving >99% of memory and runtime.

atlasapprox

Last released Sep 19, 2024

Cell atlas approximations, Python API

HTSeq

Last released Sep 12, 2024

A framework to process and analyze data from high-throughput sequencing (HTS) assays

FFPopSim

Last released Nov 23, 2022

Library to simulate evolution of large populations that are polymorphic at many loci.

northstar

Last released Jul 25, 2022

Single cell type annotation guided by cell atlases, with freedom to be queer.

anndataks

Last released Jul 16, 2020

KS test for single cell RNA Seq AnnData

slmpy

Last released Apr 17, 2019

Smart local moving (SLM) community detection in Python/C++

singlet

Last released Feb 25, 2019

Single cell RNA Seq analysis

lshknn

Last released Feb 22, 2018

k nearest neighbor (KNN) graphs via Pearson correlation distance and local sensitive hashing (LSH).

seqanpy

Last released Aug 1, 2017

Fast pairwise sequence alignment using SeqAn

PySang

Last released Jan 26, 2015

Visualizer for Sanger chromatographs (ABI/AB1).