32 projects
varcode
Variant annotation in Python
pyensembl
Python interface to Ensembl reference genome metadata
serializable
Base class with serialization helpers for user-defined Python objects
sercol
Rich collection class with grouping and filtering helpers
datacache
Helpers for transparently downloading datasets
mhctools
Python interface to running command-line and web-based MHC binding predictors
golfy
Heuristic peptide pool optimization for ELISpot and other immunological assays
gtfparse
Parsing library for extracting data frames of genomic features from GTF files
isovar
Determine mutant protein sequences from RN using assembly around variants
mhcgnomes
Python library for parsing MHC nomenclature in the wild
weirdo
Peptide similarity measures, distance functions, and attempts to quantify the 'self' proteome
fancyimpute
Matrix completion and feature imputation algorithms
vaxrank
Mutant peptide ranking for personalized cancer vaccines
parakeet
Runtime compiler for numerical Python.
msmhc
Looking for dark matter of the MHC ligandome in mass spectra
mutexp
Predict mutation-specific expression from DNA features
scalarmix
Scalar bimodal Gaussian mixture models
openvax_project_template
Project template for OpenVax Python projects
topiary
Predict cancer epitopes from cancer sequence data
mhcnames
Python library for MHC nomenclature parsing
pepdata
Immunological peptide datasets and amino acid properties
typechecks
Helper functions for runtime type checking
pepnet
Neural networks for amino acid sequences
knnimpute
k-Nearest Neighbor imputation
tinytimer
Tiny Python benchmarking library
censored_regression
Linear regression where some of the labels are lower bounds
epitopes
Python interface to IEDB and other immune epitope data
dsltools
Helpers for creating and traversing recursively nested data structures in Python.
TreeLike
Helpers for creating and traversing recursively nested data structures in Python.
shiver
A multi-threaded work queue for functions compiled with llvmpy
loopjit
Syntax, types, and codegen helpers for compiling loop-oriented numerical code to LLVM in Python.
moving_pictures
Create a movie from a sequence of images in Python (uses PIL and ffmpeg)
