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Username   iskander

29 projects

varcode

Last released on

Variant annotation in Python

serializable

Last released on

Base class with serialization helpers for user-defined Python objects

isovar

Last released on

Determine mutant protein sequences from RN using assembly around variants

pyensembl

Last released on

Python interface to ensembl reference genome metadata

mhctools

Last released on

Python interface to running command-line and web-based MHC binding predictors

parakeet

Last released on

Runtime compiler for numerical Python.

fancyimpute

Last released on

Matrix completion and feature imputation algorithms

msmhc

Last released on

Looking for dark matter of the MHC ligandome in mass spectra

vaxrank

Last released on

Mutant peptide ranking for personalized cancer vaccines

gtfparse

Last released on

GTF Parsing

datacache

Last released on

Helpers for transparently downloading datasets

mutexp

Last released on

Predict mutation-specific expression from DNA features

scalarmix

Last released on

Scalar bimodal Gaussian mixture models

openvax_project_template

Last released on

Project template for OpenVax Python projects

topiary

Last released on

Predict cancer epitopes from cancer sequence data

sercol

Last released on

Rich collection class with grouping and filtering helpers

mhcnames

Last released on

Python library for MHC nomenclature parsing

pepdata

Last released on

Immunological peptide datasets and amino acid properties

typechecks

Last released on

Helper functions for runtime type checking

pepnet

Last released on

Neural networks for amino acid sequences

knnimpute

Last released on

k-Nearest Neighbor imputation

tinytimer

Last released on

Tiny Python benchmarking library

censored_regression

Last released on

Linear regression where some of the labels are lower bounds

epitopes

Last released on

Python interface to IEDB and other immune epitope data

dsltools

Last released on

Helpers for creating and traversing recursively nested data structures in Python.

TreeLike

Last released on

Helpers for creating and traversing recursively nested data structures in Python.

shiver

Last released on

A multi-threaded work queue for functions compiled with llvmpy

loopjit

Last released on

Syntax, types, and codegen helpers for compiling loop-oriented numerical code to LLVM in Python.

moving_pictures

Last released on

Create a movie from a sequence of images in Python (uses PIL and ffmpeg)

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