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Username    iskander

30 projects

fancyimpute

Last released

Matrix completion and feature imputation algorithms

pyensembl

Last released

Python interface to ensembl reference genome metadata

mhcgnomes

Last released

Python library for parsing MHC nomenclature in the wild

mhctools

Last released

Python interface to running command-line and web-based MHC binding predictors

vaxrank

Last released

Mutant peptide ranking for personalized cancer vaccines

isovar

Last released

Determine mutant protein sequences from RN using assembly around variants

gtfparse

Last released

GTF Parsing

varcode

Last released

Variant annotation in Python

serializable

Last released

Base class with serialization helpers for user-defined Python objects

parakeet

Last released

Runtime compiler for numerical Python.

msmhc

Last released

Looking for dark matter of the MHC ligandome in mass spectra

datacache

Last released

Helpers for transparently downloading datasets

mutexp

Last released

Predict mutation-specific expression from DNA features

scalarmix

Last released

Scalar bimodal Gaussian mixture models

openvax_project_template

Last released

Project template for OpenVax Python projects

topiary

Last released

Predict cancer epitopes from cancer sequence data

sercol

Last released

Rich collection class with grouping and filtering helpers

mhcnames

Last released

Python library for MHC nomenclature parsing

pepdata

Last released

Immunological peptide datasets and amino acid properties

typechecks

Last released

Helper functions for runtime type checking

pepnet

Last released

Neural networks for amino acid sequences

knnimpute

Last released

k-Nearest Neighbor imputation

tinytimer

Last released

Tiny Python benchmarking library

censored_regression

Last released

Linear regression where some of the labels are lower bounds

epitopes

Last released

Python interface to IEDB and other immune epitope data

dsltools

Last released

Helpers for creating and traversing recursively nested data structures in Python.

TreeLike

Last released

Helpers for creating and traversing recursively nested data structures in Python.

shiver

Last released

A multi-threaded work queue for functions compiled with llvmpy

loopjit

Last released

Syntax, types, and codegen helpers for compiling loop-oriented numerical code to LLVM in Python.

moving_pictures

Last released

Create a movie from a sequence of images in Python (uses PIL and ffmpeg)

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