fgpyo

Last released Oct 24, 2024

Python bioinformatics and genomics library

pybedlite

Last released Aug 2, 2024

Python classes for interfacing with bed intervals

atropos

Last released Aug 14, 2020

Specific, sensitive, and speedy trimming of NGS reads.

xphyle

Last released Oct 13, 2023

Utilities for working with files.

subby

Last released Apr 7, 2023

Subprocesses simplified

pytest-datadir-nng

Last released Nov 9, 2022

Fixtures for pytest allowing test functions/methods to easily retrieve test resources from the local filesystem.

pytest-wdl

Last released Nov 17, 2020

Pytest plugin for testing WDL workflows.

wdlkit

Last released Jun 2, 2020

WDL development tools

autoclick

Last released Mar 12, 2020

Auto-generate Click-based CLIs from python3 type annotations.

ngstream

Last released Dec 25, 2019

Utilities for streaming NGS reads from SRA and GA4GH accessions.

ngsindex

Last released May 4, 2019

Utilities for working with NGS index formats.

docparse

Last released Mar 18, 2019

pokrok

Last released Jul 13, 2018

Simple API for progress bars using any of several supported libraries

srastream

Last released Jun 1, 2017

Utilities for streaming NGS reads from SRA accessions.