17 projects
tskit
The tree sequence toolkit.
tsinfer
Infer tree sequences from genetic variation data.
tszip
Compression utilities for tree sequences
msprime
Simulate genealogical trees and genomic sequence data using population genetic models
stdpopsim
A library of population genetic simulation models
kastore
A write-once-read-many store for simple numerical data
lshmm
None
bio2zarr
Convert bioinformatics data to Zarr
tstrait
Quantitative trait simulation of tree sequence data
wormtable
Write-once read-many data sets using Berkeley DB.
sc2ts
Infer a succinct tree sequence from SARS-CoV-2 sequence alignments
demes
tools for describing demographic models
htsget
Python API and command line interface for the GA4GH htsget API.
phylokit
"Experimental, do not use!"
kingman
An example Python package to simulate Kingman's coalescent
discsim
Efficient coalescent simulation in continuous space
ercs
Coalescent simulations in continuous space
