39 projects
GenomicArrays
Genomic region based arrays backed by TileDB
cellarr
TileDB-based array storage for genomics data collections.
SummarizedExperiment
Container to represent data from genomic experiments
rds2py
Parse and construct Python representations for datasets stored in RDS files
biocutils
Utilities to use across the biocpy packages.
pygobbler
Python client for the Gobbler service
GenomicRanges
Container class to represent and operate over genomic regions and annotations.
DelayedArray
Delayed array operations from Bioconductor
dolomite-sce
Save and load single-cell experiments in the dolomite framework!
dolomite-se
Save and load summarized experiments in the dolomite framework!
dolomite-matrix
Save and load matrices in the dolomite framework
dolomite-base
Save and load Bioconductor objects in Python
IRanges
Python implementation of the [**IRanges**](https://bioconductor.org/packages/IRanges) Bioconductor package.
MultiAssayExperiment
Container class for representing and managing multi-omics genomic experiments
SingleCellExperiment
Container class for single-cell experiments
SewerRat
Python client for the SewerRat API
coitrees
Add a short description here!
mopsy
Matrix operations for numpy and scipy
mattress
All your matrix representations belong here!
singler
Python bindings to the singleR algorithm to annotate cell types from known references.
hdf5array
HDF5-backed objects for array and matrix like data
scrnaseq
Collection of Public Single-Cell RNA-Seq Datasets
BiocFrame
Flexible dataframe representation to support nested structures.
celldex
Index of Reference Cell Type Datasets
gypsum-client
Python client to gypsum REST API
pyBiocFileCache
File based cache for resources and metadata
dolomite-mae
Save and load multi-assay experiments in the dolomite framework!
dolomite-ranges
Stage and load genomic ranges from disk.
tiledbarray
TileDb backed objects for array and matrix like data
scranpy
Analyze multi-modal single-cell data!
dolomite
Wrapper package for all dolomite-* packages.
FileBackedArray
File backed objects for array and matrix like data
dolomite-schemas
JSON schemas for bioconductor objects.
BiocGenerics
Generics for core data structures in biocpy
assorthead
Assorted C++ headers
cpptypes
Automatically creates the C++ and Python-side wrappers for ctypes bindings.
BiocPy
Interface to all [BiocPy](https://github.com/BiocPy) packages
epivizFileParser
Parse and Query Genomic File Formats.
epivizFileServer
A python library to interact, explore and compute data directly from genomic files.
