Pomegranate is a graphical models library for Python, implemented in Cython for speed.
rambutan is a python wrapper for caffe, aiming to provide a simpler way to define, train, and evaluate models.
Nanopore Data Analysis package. Provides tools for reading data, performing event detection, segmentation, visualization, and analysis using hidden Markov models, and other tools. Designed for the UCSC Nanopore Group.
YAHMM is a HMM package for Python, implemented in Cython for speed.
antz is a bioinformatics package written for python.
YABN is a Bayesian Network package for Python, implemented in Cython for speed.
DISCERN is a method for identifying perturbations between two similar graphs. It takes in samples from two networks, and identifies which features are conditionally dependent on different features between the two