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  johanneskoester

5 projects

snakemake

Last released on Jul 11, 2018

Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.

vispr

Last released on Feb 15, 2017

Interactive HTML5 visualization for CRISPR/Cas9 knockout screen experiments.

peanut

Last released on Jul 16, 2015

A massively parallel GPU read mapper using OpenCL.

alpaca-variant-caller

Last released on Feb 6, 2015

An algebraic parallel SNV caller using OpenCL

trminer

Last released on Mar 5, 2012

mine scientific publications for interesting sentences using patterns

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