snakemake-wrapper-utils

Last released Jan 17, 2022

A collection of utils for Snakemake wrappers.

snakemake

Last released Jan 11, 2022

Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.

snakedeploy

Last released Dec 2, 2021

Deploy a snakemake pipeline from GitHub

snakefmt

Last released Oct 18, 2021

The uncompromising Snakemake code formatter

vispr

Last released Feb 15, 2017

Interactive HTML5 visualization for CRISPR/Cas9 knockout screen experiments.

peanut

Last released Jul 16, 2015

A massively parallel GPU read mapper using OpenCL.

alpaca-variant-caller

Last released Feb 6, 2015

An algebraic parallel SNV caller using OpenCL

trminer

Last released Mar 5, 2012

mine scientific publications for interesting sentences using patterns