A collection of utils for Snakemake wrappers.
Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.
Deploy a snakemake pipeline from GitHub
The uncompromising Snakemake code formatter
Interactive HTML5 visualization for CRISPR/Cas9 knockout screen experiments.
A massively parallel GPU read mapper using OpenCL.
An algebraic parallel SNV caller using OpenCL
mine scientific publications for interesting sentences using patterns