5 projects
snakemake
Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.
vispr
Interactive HTML5 visualization for CRISPR/Cas9 knockout screen experiments.
peanut
A massively parallel GPU read mapper using OpenCL.
alpaca-variant-caller
An algebraic parallel SNV caller using OpenCL
trminer
mine scientific publications for interesting sentences using patterns
