23 projects
skclust
A comprehensive clustering toolkit with advanced tree cutting and visualization
compositional
Compositional data analysis in Python
fastq-preprocessor
Fast short read fastq preprocessor with optional contamination removal
leviathan
Genome-resolved taxonomic and pathway profiling
pyexeggutor
Run shell commands in Python
nf-modules
Nextflow bioinformatics modules
ensemble-networkx
Ensemble networks in Python
kegg-pathway-profiler
KEGG Pathway Profiler
torch-genomics
Deep learning utilities for genomics with PyTorch
pyhmmsearch
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer
pykofamsearch
Fast implementation of KofamScan optimized for high-memory systems using PyHmmer
deep-genomics
Deep learning utilities for genomics
clairvoyance-feature-selection
AutoML simultaneous bayesian hyperparameter optimization and feature selection
niche-space
Hierarchical niche space analysis in python
veba-core
Core utilities for VEBA
rule-evaluator
Lightweight Python-based nested rule evaluator
soothsayer
High-level package for (bio-)informatics
hive-networkx
Hive plots in Python
genopype
Architecture for building creating pipelines
hierarchical-ensemble-classifier
Customizable Scikit-Learn compatible hierarchical ensemble of classifiers models
weighted-bootstrap-randomforest
Implementations of Weighted bootstrap Random Forests classifier and regressors
soothsayer-utils
Utility functions for Soothsayer
veba
Virus Eukaryote Bacteria Archaea
