53 projects
torchyield
Make PyTorch models using generator functions.
multipartial
N-dimensional arrays of partial functions.
macromol-gym-pretrain
Self-supervised pre-training for macromolecular data
autoclasstoc
Add a succinct TOC to auto-documented classes.
macromol-gym-unsupervised
An unsupervised macromolecular coordinate dataset
avendesora
A password generator and account manager.
macromol-voxelize
Create 3D images from atomic coordinates
macromol-census
Tools for creating machine-learning datasets from macromolecular structure
macromol-dataframe
Manipulate macromolecular coordinate data using data frames.
parametrize-from-file
Parametrize test functions with values read from config files.
pipeline-func
A utility for calling functions in pipelines.
pytest-tmp-files
Utilities to create temporary file hierarchies in pytest.
wellmap
File format for 96-well plate layouts.
funcattr
Assign attributes to functions using a decorator.
signature-dispatch
Execute the first function that matches the given arguments.
cfu_count
Infer the cell density of a culture from the number of colonies observed in
tidyexc
An exception class inspired by the tidyverse style guide.
freezerbox
Database of DNA sequences.
stepwise
Wetlab protocols that follow the Unix philosophy.
byoc
An object-oriented framework for command-line apps.
autoprop
Infer properties from accessor methods.
reprfunc
Utilities for making useful string representations of objects.
cloning
Simulate DNA cloning reactions.
stack-alert
Be notified when interesting questions are posted to Stack Exchange sites.
pba-waeber2013
Implementation of the stochastic root-finding algorithm described by
appcli
An object-oriented framework for command-line apps.
vecrec
2D vector and rectangle classes.
ncaars
Expand the genetic code: design aaRSs for NCAAs
glooey
An object-oriented GUI library for pyglet.
stepwise-mol-bio
Protocols relating to molecular biology, e.g. PCR.
exmemo
sparekeys
Make and distribute encrypted copies of the files that you would need to
po4
Database of DNA sequences.
dirty-water
autosnapgene
Provide an API for parsing SnapGene *.dna files.
tich-me
bio96
File format for 96-well plate layouts
nonstdlib
A collection of general-purpose utilities
klab
A collection of utilities used by our lab for computational biophysics
fossilize
pull_into_place
A rosetta pipeline to position important protein sidechains with sub-angstrom accuracy.
show_my_designs
A GUI for visualizing and interacting with score vs RMSD plots.
debugtools
color_me
kbkdna
Simple tools for working with DNA
kxg
A multiplayer game engine.
fcmcmp
A lightweight, flexible, and modern framework for annotating flow cytometry data.
know_its_ok
An easy way to debug your code.
wet_copy
Format and print wetlab protocols stored as text files in git repositories.
two_cents
UNKNOWN
rosetta_dev_tools
A set of tools to facilitate development of the Rosetta protein design suite.
linersock
A thin layer between you and your sockets that helps prevent chafing.
KeepMePosted
An object-oriented event handling framework where events are registered by classes and then broadcasted by individual objects. Listening for events from specific objects is made easy.
