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Kale Kundert

Username    kalekundert
Date joined   Joined

54 projects

macromol-gym

Last released

Macromolecular training sets that emphasize protein/non-protein interactions.

macromol-dataframe

Last released

Manipulate macromolecular coordinate data using data frames.

macromol-census

Last released

Tools for creating machine-learning datasets from macromolecular structure

torchyield

Last released

Make PyTorch models using generator functions.

multipartial

Last released

N-dimensional arrays of partial functions.

macromol-gym-pretrain

Last released

Self-supervised pre-training for macromolecular data

autoclasstoc

Last released

Add a succinct TOC to auto-documented classes.

macromol-gym-unsupervised

Last released

An unsupervised macromolecular coordinate dataset

avendesora

Last released

A password generator and account manager.

macromol-voxelize

Last released

Create 3D images from atomic coordinates

parametrize-from-file

Last released

Parametrize test functions with values read from config files.

pipeline-func

Last released

A utility for calling functions in pipelines.

pytest-tmp-files

Last released

Utilities to create temporary file hierarchies in pytest.

wellmap

Last released

File format for 96-well plate layouts.

funcattr

Last released

Assign attributes to functions using a decorator.

signature-dispatch

Last released

Execute the first function that matches the given arguments.

cfu_count

Last released

Infer the cell density of a culture from the number of colonies observed in

tidyexc

Last released

An exception class inspired by the tidyverse style guide.

freezerbox

Last released

Database of DNA sequences.

stepwise

Last released

Wetlab protocols that follow the Unix philosophy.

byoc

Last released

An object-oriented framework for command-line apps.

autoprop

Last released

Infer properties from accessor methods.

reprfunc

Last released

Utilities for making useful string representations of objects.

cloning

Last released

Simulate DNA cloning reactions.

stack-alert

Last released

Be notified when interesting questions are posted to Stack Exchange sites.

pba-waeber2013

Last released

Implementation of the stochastic root-finding algorithm described by

appcli

Last released

An object-oriented framework for command-line apps.

vecrec

Last released

2D vector and rectangle classes.

ncaars

Last released

Expand the genetic code: design aaRSs for NCAAs

glooey

Last released

An object-oriented GUI library for pyglet.

stepwise-mol-bio

Last released

Protocols relating to molecular biology, e.g. PCR.

exmemo

Last released

sparekeys

Last released

Make and distribute encrypted copies of the files that you would need to

po4

Last released

Database of DNA sequences.

dirty-water

Last released

autosnapgene

Last released

Provide an API for parsing SnapGene *.dna files.

tich-me

Last released

bio96

Last released

File format for 96-well plate layouts

nonstdlib

Last released

A collection of general-purpose utilities

klab

Last released

A collection of utilities used by our lab for computational biophysics

fossilize

Last released

pull_into_place

Last released

A rosetta pipeline to position important protein sidechains with sub-angstrom accuracy.

show_my_designs

Last released

A GUI for visualizing and interacting with score vs RMSD plots.

debugtools

Last released

color_me

Last released

kbkdna

Last released

Simple tools for working with DNA

kxg

Last released

A multiplayer game engine.

fcmcmp

Last released

A lightweight, flexible, and modern framework for annotating flow cytometry data.

know_its_ok

Last released

An easy way to debug your code.

wet_copy

Last released

Format and print wetlab protocols stored as text files in git repositories.

two_cents

Last released

UNKNOWN

rosetta_dev_tools

Last released

A set of tools to facilitate development of the Rosetta protein design suite.

linersock

Last released

A thin layer between you and your sockets that helps prevent chafing.

KeepMePosted

Last released

An object-oriented event handling framework where events are registered by classes and then broadcasted by individual objects. Listening for events from specific objects is made easy.

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