kdm9

blindschleiche

Last released Oct 28, 2024

Miscelanelous python-based bioinformatics utils

acanthophis

Last released Aug 26, 2024

A comprehensive, opinionated plant variant calling pipeline in Snakemake

raugraf

Last released May 3, 2024

None

markdown-lightbox

Last released Dec 15, 2023

Markdown extension which turns images into lightbox

bash_kernel

Last released Nov 24, 2023

A bash kernel for Jupyter

qrmagic

Last released Nov 24, 2023

Tools to manage qrcoded labels and images during Natural Variaiton experiments

tkdm

Last released Oct 21, 2023

kdm9's toolkit

nvtk-sitesheets

Last released May 27, 2023

Tool to create templated metadata sheets for fieldwork experiments

accessiontk

Last released Jul 29, 2022

Tools to manage lists of accessions

radsim

Last released Oct 14, 2021

RADsim: simulate reduced-represention sequencing platforms based on restriction digestion, including RADseq and GBS.

pbshax

Last released Jul 14, 2021

Tools to assist with bioinformatics on PBS clusters

srapy

Last released Mar 9, 2021

SRApy: Scripts to download SRA files

frisk

Last released Mar 28, 2016

frisk: Detection of sequence composition anomalies using multiple order kmers.

exif2timestream

Last released Jun 10, 2015

exif2timestream: Rename image files into a timestream from exif data.