11 projects
cpgtools
Tools to analyze and visualize DNA methylation data
RSeQC
QC package for RNA-seq data.
CrossMap
CrossMap -- Lift over genomics coordinates between assemblies.
epical
epical --- Epigenetic age Calculator
CPAT
CPAT (Coding Potential Assessment Tool).
cobind
collocation analysis of genomics intervals
spiker
spiker (Analysis workflow for ChIP-seq data with spike-in)
epage
Evaluate Protein Activity with Gene Expression
epiprofile
Epidaurus is a program to visualize the epigenomic landscape of genomic regions of interest (TF bindings, TSS, etc).
FusionVet
A bioinformatics tool to visualize and evaluate *known* gene fusions
Dcon
A program to assess DNA contamination level
