11 projects
sphae
Assembling pure culture phages from both Illumina and Nanopore sequencing technology
PyDNARepeatFinder
Rapidly identify repeats in a DNA sequence
pygenetic-code
Translate DNA sequences to protein sequences using different genetic codes and translation tables
pyctv-taxonomy
Download ICTV Virus Classifications as Python Objects
py-fasta-validator
A small, lightweight, fast fasta validator written in C
genbank-to
Convert GenBank format files to a swath of other formats
superfocus
SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data
PhiSpy
Prophage finder using multiple metrics
metagenomics-focus
FOCUS: An Agile Profiler for Metagenomic Data
PyFBA
A Python implementation of flux balance analysis
PPPF
Probabilistic Phage Protein Functions: Phage genomes and their annotations
