Luis Pedro Coelho

SemiBin

Last released Dec 7, 2025

Metagenomic binning with siamese neural networks

proGenomes

Last released Nov 30, 2025

A proGenomes command-line tool for interacting with bacterial and archeal genomes.

macrel

Last released Nov 24, 2025

MACREL

argnorm

Last released Jun 24, 2025

Normalize antibiotic resistance genes (ARGs) results by using the ARO ontology (developed by CARD).

spirepy

Last released Jun 24, 2025

A SPIRE wrapper and command-line tool for interacting with global microbiome data.

Jug

Last released May 8, 2025

A Task Based Parallelization Framework

imread

Last released Aug 3, 2024

imread: Image reading library

mahotas

Last released Jul 17, 2024

Mahotas: Computer Vision Library

S3N2Bin

Last released Mar 22, 2021

Metagenomic binning with semi-supervised siamese neural network

GMGC-mapper

Last released Jun 25, 2020

Map genes and genome to the Global Microbial Gene Catalog (GMGC)

Safeout

Last released May 20, 2020

Write out a file safely (atomically)

nixml

Last released Mar 14, 2020

NixML: reproducible environments with nix + YAML

diskhash

Last released Nov 11, 2019

Disk-based hashtable

NGLessPy

Last released Jun 7, 2018

NGLessPy: Python interface to NGLess

milk

Last released May 11, 2015

Machine Learning Toolkit

milksets

Last released Mar 22, 2015

Milk sets: Machine Learning Datasets

waldo

Last released Jun 14, 2013

Protein Subcellular Location Information Package

django-gitcms

Last released Aug 22, 2012

Django Git CMS: A django based git-backed content management system

PySLIC

Last released Jan 7, 2011

Subcellular Location Image Classifier

pymorph

Last released Dec 3, 2010

Image Morphology Toolbox

readmagick

Last released May 20, 2009

Read and write images using ImageMagick

ncreduce

Last released Aug 14, 2008

Fast reduce operations for numpy arrays

ngless-cwl Archived

Last released Apr 19, 2017

ngless wrappers for common operations and use with CWL workflows