12 projects
dnaio
Read and write FASTA and FASTQ files efficiently
zlib-ng
Drop-in replacement for zlib and gzip modules using zlib-ng
isal
Faster zlib and gzip compatible compression and decompression by providing python bindings for the ISA-L library.
cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
xopen
Open compressed files transparently
whatshap
phase genomic variants using DNA sequencing reads
tinyalign
Fast banded edit distance
igdiscover
Analyze antibody repertoires and discover new V genes
pysam-stubs
alignlib
Some sequence alignment routines
sqt
Command-line tools for the analysis of high-throughput sequencing data
