cghla

Last released Mar 10, 2023

Tools for finding HLA alleles for WGS/RNAseq samples

swalign

Last released Sep 29, 2022

Smith-Waterman local aligner

ngsutils

Last released May 7, 2016

NGSUtils - Various utilities for working with NGS data

sjq

Last released Nov 7, 2014

SJQ - Simple Job Queue - Single host, resource aware, batch job scheduler

eta

Last released Oct 21, 2014

ETA Progress bar for command-line utilities

mvpipe

Last released Oct 10, 2014

Minimum viable pipeline tool for HPC clusters

tabql

Last released Mar 3, 2014

Use SQLite to query tab-delimited text files

pwmscan

Last released Jan 28, 2014

Scans a DNA sequence against a PWM

qtask

Last released Aug 26, 2013

Utility library for submitting jobs to a cluster (SGE, PBS, etc)