8 projects
fragscan_ct
This Python package, is designed to calculate the fragment length ratios from a BAM file using the input BED and reference genome files. The script provides several options for manipulating the input intervals and applying GC content correction to the coverage analysis.
postprocessing_variant_calls
This hosts multiple scripts necessary for filtering and processing of variant calls in the vcfs/txt file generated by callers.
biometrics
Package to generate sample based biometrics.
bed-lookup
Lookup a gene by coordinate from a bed
python-bed-lookup
multiqc-msk
Create aggregate bioinformatics analysis reports across many samples and tools
fgbio-postprocessing
fgbio_postprocessing
merge-fastq
Package to merge multiple pair of pair-end fastq data
