48 projects
cwltool
Common workflow language reference implementation
galaxy-tool-util
Galaxy tool and tool dependency utilities
bioblend
Library for interacting with the Galaxy API
galaxy-tool-shed
Galaxy auth framework and implementations
galaxy-test-driver
Galaxy test driver
galaxy-web-apps
Galaxy web apps
galaxy-app
Galaxy application (backend)
galaxy-web-stack
Galaxy web stack abstraction
galaxy-web-framework
Galaxy web framework
galaxy-test-api
Galaxy API tests
galaxy-job-execution
Galaxy job execution runtime utilities
galaxy-auth
Galaxy auth framework and implementations
galaxy-test-base
Galaxy testing utilities
galaxy-tours
Galaxy tours backend framework
galaxy-selenium
Galaxy Selenium interaction framework
galaxy-data
Galaxy datatype framework and datatypes
galaxy-schema
Galaxy auth framework and implementations
galaxy-objectstore
Galaxy objectstore framework and plugins
galaxy-navigation
Galaxy client DOM navigation framework
galaxy-job-metrics
Galaxy job metrics
galaxy-files
Galaxy file source framework and default plugins
galaxy-config
Galaxy configuration
galaxy-util
Galaxy generic utilities
schema-salad
Schema Annotations for Linked Avro Data (SALAD)
cwl-utils
None
planemo
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
cwltest
Common Workflow Language testing framework
gxformat2
Galaxy Workflow Format 2 Descriptions
galaxy-release-util
Utlity for various tasks around creating Galaxy releases
gravity
Command-line utilities to assist in managing Galaxy servers
ephemeris
Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
pulsar-galaxy-lib
Distributed job execution application built for Galaxy (http://galaxyproject.org/).
pulsar-app
Distributed job execution application built for Galaxy (http://galaxyproject.org/).
cwl-upgrader
Upgrade a CWL tool or workflow document from one version to another
tuswsgi
python wsgi filter for tus protocol 1.0.0
galaxy-test-selenium
Galaxy Selenium Tests
galaxy-containers
Galaxy Container Modeling and Interaction Abstractions
galaxy-test-tools
Galaxy Test Tools`
galaxy-authnz
Galaxy AuthNZ
galaxy-model-tools
Galaxy Model Tools`
mock-ssh-server
Mock SSH server for testing purposes
workflow2executable
Turn Galaxy Workflows into standalone scripts.
readtagger
Tags reads in a BAM file based on other BAM files.
galaxy-lib
Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.
compare-reads
cythonized function to compare reads by name
dedup_hash
Finds and discards exact duplicate reads in fastq files.
ifbcloud
Commandline utility to start and stop instances on the french IFB cloud
cwlref-runner
Common workflow language reference implementation
