12 projects
cooler
Sparse binary format for genomic interaction matrices.
oxbow
Read genomic file formats into data frames and more.
clodius
Tile generation for big data
higlass-python
Python bindings for HiGlass
bioframe
Operations and utilities for Genomic Interval Dataframes.
pybbi
Python bindings to the UCSC source for Big Binary Indexed (bigWig/bigBed) files.
assemblyinfo
A Python library for working with harmonized genome metadata
cooltools
Analysis tools for genomic interaction data stored in .cool format
ipylangchat
Serverless chat UI Jupyter widget for langchain conversational AIs
pqdict
A Pythonic indexed priority queue.
dask-ngs
Scalable access to bioinformatics data with Dask.
svgpath2mpl
SVG path parser for matplotlib
