pylabeledrf

Last released Nov 19, 2024

A package to compute the Robinson Fould distance extended to labeled topologies.

FastOMA

Last released Nov 18, 2024

FastOMA - a package to infer orthology information among proteomes

omamer

Last released Nov 13, 2024

OMAmer - tree-driven and alignment-free protein assignment to sub-families

fuzzyset2

Last released Oct 21, 2024

A simple python fuzzyset implementation.

edgehog

Last released Oct 10, 2024

Infering ancestral synteny with hierarchical orthologous groups

pyoma

Last released Sep 25, 2024

library to interact and build OMA hdf5 files

gethogs

Last released Mar 20, 2024

A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs

pyham

Last released Mar 19, 2024

A tool to analyse Hierarchical Orthologous Groups (HOGs)

omadb

Last released Jan 17, 2024

Client to the OMA browser, using the REST API.

omark

Last released Oct 18, 2023

OMArk - Proteome quality assesment based on OMAmer placements

Rmath4

Last released Oct 10, 2023

standalone Rmath library from R

PySAIS

Last released Aug 21, 2023

Suffix array computation with induced sorting algorithm.

pyopa

Last released Jul 28, 2023

PyOPA - optimal pairwise sequence alignments

django-matomo-api-tracking

Last released Mar 28, 2023

Django app to track webtraffic serverside with Matomo API

omataxonomy

Last released Feb 7, 2023

Package to work with combined NCBI and GTDB taxonomy

omamo

Last released Feb 10, 2022

OMAmo - orthology-based model organism selection

familyanalyzer

Last released Aug 31, 2020

A tool to analyse gene family evolution from orthoxml

qtlsearch

Last released Feb 8, 2019

Uses OMA's HOGs to predict genes related to QTL.

siblings

Last released May 21, 2015

Siblings is a code base to compute homologs between genomes and make them publicly available through a REST api