16 projects
varcode
Variant annotation in Python
pyensembl
Python interface to Ensembl reference genome metadata
serializable
Base class with serialization helpers for user-defined Python objects
sercol
Rich collection class with grouping and filtering helpers
datacache
Helpers for transparently downloading datasets
mhctools
Python interface to running command-line and web-based MHC binding predictors
gtfparse
Parsing library for extracting data frames of genomic features from GTF files
isovar
Determine mutant protein sequences from RN using assembly around variants
fancyimpute
Matrix completion and feature imputation algorithms
vaxrank
Mutant peptide ranking for personalized cancer vaccines
openvax_project_template
Project template for OpenVax Python projects
topiary
Predict cancer epitopes from cancer sequence data
mhcnames
Python library for MHC nomenclature parsing
pepdata
Immunological peptide datasets and amino acid properties
typechecks
Helper functions for runtime type checking
pepnet
Neural networks for amino acid sequences
