12 projects
mergesvvcf
Merge SV VCF calls. Fork of https://github.com/ljdursi/mergevcf by Jonathan Dursi (Jonathan.Dursi@oicr.on.ca)
toil-strelka
Toil implementation of Strelka SNV Caller
jupyterlab-lsf
📙 Run jupyter lab in an LSF host and map its port
toil-container
A python package with a Toil Job Class capable of containerized system calls.
cookiecutter-toil
🍪 A cookiecutter for the creation of toil pipelines.
toil-cvflag
A toil implementation of caveman flagging for vcf files.
toil-pindel
A toil wrapper for cgp pindel.
toil-caveman
A toil wrapper for cgpCaveman.
register-apps
👾 Register versioned toil container pipelines and other commands in singularity containers.
toil-say
🛰 A demo Toil pipeline for HPC's group meeting.
leukgen-disambiguate
Disambiguate reads mapping to multiple genomes. This is a frozen release with some bug fixes of the original AstraZeneca-NGS/disambiguate v1.0.
click-demultiplex
Command Line Tool to Demultiplex a paired-end fastq file into several fastq files,
