22 projects
colomoto-jupyter
CoLoMoTo helper functions for Juypter integration
bonesis
Synthesis of Most Permissive Boolean Networks
mpbn
Simple implementation of Most Permissive Boolean networks
erode-python
maboss
A python and jupyter API for the MaBoSS software
pypint
Python interface to Pint
colomoto-docker
Helper script to run docker image colomoto/colomoto-docker
modian
Simple python library for Boolean networks
mpbn-sim
Simulation of Most Permissive Boolean networks
scBoolSeq
scRNA-Seq data binarisation and synthetic generation from Boolean dynamics.
ginsim
Python interface to GINsim and BioLQM API
caspo
Reasoning on the response of logical signaling networks with Answer Set Programming
profile-binr
PROFILE methodology for the binarisation and normalisation of RNA-seq data
donodo
Bridging Docker images with Zenodo
boolsim
Python interface to boolSim
satex
Helper script for managing SAT Heritage docker images
stablemotifs
Python interface to StableMotifs
caspo-control
Python wrapper for caspo control
actonet
Abduction-based control of Boolean networks fixpoints
cabean
Python interface to CABEAN, A Software Tool for the Control of Asynchronous Boolean Networks
algorecell-types
Generic types for reprogramming predictions from logical models
adys
Simple python library for Boolean networks