8 projects
napari-bacseg
Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
napari-molseeq
A Napari plugin for extracting single molecule sequences from single/multi-channel SMLM microscopy data.
napari-SMLMLAB
Napari widget for BP04 Practical.
napari-moltrack
A user-friendly SMLM analysis platfrom for napari, which includes single molecule localisation, tracking, and analysis features.
bactfit
Coordinate transformations for bacterial cell masks
TraceAnalyser
Time Series Analysis Software
napari-PixSeq
A Napari plugin for extracting time series traces from Single Molecule Localisation Microsocpy (SMLM) data.
DeepGapSeq
An smFRET analysis package, including deeplearning for gap state identification
