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Username    pwwang
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55 projects

pipen-report

Last released

Report generation system for pipen

xqute

Last released

A job management system for python

biopipen

Last released

Bioinformatics processes/pipelines that can be run from `pipen run`

pyparam

Last released

Powerful parameter processing.

pipen-cli-run

Last released

A pipen cli plugin to run a process or a pipeline

pipen

Last released

A pipeline framework for python

datar-cli

Last released

CLI interface for datar

immunopipe

Last released

A pipeline for integrative analysis for scTCR- and scRNA-seq data

datar

Last released

Port of dplyr and other related R packages in python, using pipda.

pipen-verbose

Last released

Add verbosal information in logs for pipen.

liquidpy

Last released

A port of liquid template engine for python

pipen-args

Last released

Command-line argument parser for pipen.

pipen-filters

Last released

Add a set of useful filters for pipen templates

python-simpleconf

Last released

Simple configuration management with python.

diot

Last released

Python dictionary with dot notation.

pipen-cli-init

Last released

A pipen cli plugin to create a pipen project (pipeline)

pipen-diagram

Last released

Draw pipeline diagrams for pipen.

pipen-dry

Last released

Dry runner for pipen pipelines

vcfstats

Last released

Powerful statistics for VCF files

varname

Last released

Dark magics about variable names in python.

plotnine-prism

Last released

Prism themes for plotnine, inspired by ggprism

mkapi-fix

Last released

An Auto API Documentation tool.

pipda

Last released

A framework for data piping in python

pardoc

Last released

Yet another docstring parser for python

medoo

Last released

A lightweight database framework for python

cmdy

Last released

Shell language to run command in python

modkit

Last released

Tweak your modules the way you want

pipen-annotate

Last released

Use docstring to annotate pipen processes

imtherapy-tmb

Last released

Tumor mutation burden feature transformation module for imtherapy

imtherapy

Last released

A framework to explore, select and discover predictive markers for cancer immunotherapy

plkit

Last released

A wrapper for pytorch-lightning to make you write even less code

simplug

Last released

A simple plugin system for python with async hooks supported

pyppl-context

Last released

Upstream and downstream process reference for PyPPL

pyppl-strict

Last released

More strict check of job success for PyPPL

pyppl-echo

Last released

Echo script output to PyPPL logs

pyppl-export

Last released

Export outputs generated by PyPPL pipeline

pyppl-flowchart

Last released

Generating flowchart for PyPPL

pyppl-runners

Last released

More strict check of job success for PyPPL

pyppl-runcmd

Last released

Allowing to run local command before and after each process for PyPPL

pyppl-report

Last released

A report generating system for PyPPL

pyppl-require

Last released

Requirement manager for processes of PyPPL

pyppl

Last released

A Python PiPeLine framework

tagit

Last released

An antotagger for git.

attr-property

Last released

Property support for attrs

pyppl-rich

Last released

Richer information in logs for PyPPL

pyppl-jobtime

Last released

Job running time statistics for PyPPL

pyppl-lock

Last released

Preventing running processes from running again for PyPPL

pyppl-notify

Last released

Email notification for PyPPL

wigtools

Last released

A set of tools for wiggle file

pyppl-annotate

Last released

Adding long description/annotations for PyPPL processes.

completions

Last released

Shell completions made easy.

python-gff

Last released

A more general GFF/GTF parser

bioprocs

Last released

A set of PyPPL processes for bioinformatics.

remotedata

Last released

Accessing and caching remote data.

cmdQueue

Last released

A command line queue.

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