61 projects
pipen-cli-config
UI wizard to generate configuration for pipen pipelines
pipen-annotate
Use docstring to annotate pipen processes
pipen-args
Command-line argument parser for pipen.
liquidpy
A port of liquid template engine for python
diot
Python dictionary with dot notation.
pipen-report
Report generation system for pipen
pipen
A pipeline framework for python
pipen-cli-require
A pipen cli plugin to check requirements for processes of a pipeline
argx
Super-charged argparse for python
pipen-lock
Process lock for pipen to prevent multiple runs at the same time
xqute
A job management system for python
biopipen
Bioinformatics processes/pipelines that can be run from `pipen run`
pipen-cli-run
A pipen cli plugin to run a process or a pipeline
pipen-cli-init
A pipen cli plugin to create a pipen project (pipeline)
pipen-dry
Dry runner for pipen pipelines
pipen-diagram
Draw pipeline diagrams for pipen.
pipen-filters
Add a set of useful filters for pipen templates
pipen-verbose
Add verbosal information in logs for pipen.
datar-pandas
The pandas backend for datar
datar
A Grammar of Data Manipulation in python
cmdy
Shell language to run command in python
vcfstats
Powerful statistics for VCF files
varname
Dark magics about variable names in python.
pyparam
Powerful parameter processing.
plotnine-prism
Prism themes for plotnine, inspired by ggprism
pipda
A framework for data piping in python
datar-numpy
The numpy backend for datar
immunopipe
A pipeline for integrative analysis for scTCR- and scRNA-seq data
simplug
A simple plugin system for python with async hooks supported
toml-bench
Benchmarking for python toml libraries
benchwork
A framework for benchmarking in python
medoo
A lightweight database framework for python
dotdict-bench
Benchmarking for dot-accessible dict packages in python
pardoc
Yet another docstring parser for python
neutrapy
Command line tool for build a desktop app using neutralinojs and python
regexr
Regular expressions for humans
python-simpleconf
Simple configuration management with python.
mkapi-fix
An Auto API Documentation tool.
pdtypes
Show data types for pandas data frames in terminal and notebooks
imtherapy-tmb
Tumor mutation burden feature transformation module for imtherapy
imtherapy
A framework to explore, select and discover predictive markers for cancer immunotherapy
pyppl-context
Upstream and downstream process reference for PyPPL
pyppl-strict
More strict check of job success for PyPPL
pyppl-echo
Echo script output to PyPPL logs
pyppl-export
Export outputs generated by PyPPL pipeline
pyppl-flowchart
Generating flowchart for PyPPL
pyppl-runners
More strict check of job success for PyPPL
pyppl-runcmd
Allowing to run local command before and after each process for PyPPL
pyppl-report
A report generating system for PyPPL
pyppl-require
Requirement manager for processes of PyPPL
pyppl
A Python PiPeLine framework
pyppl-rich
Richer information in logs for PyPPL
pyppl-jobtime
Job running time statistics for PyPPL
pyppl-lock
Preventing running processes from running again for PyPPL
pyppl-notify
Email notification for PyPPL
wigtools
A set of tools for wiggle file
pyppl-annotate
Adding long description/annotations for PyPPL processes.
completions
Shell completions made easy.
python-gff
A more general GFF/GTF parser
bioprocs
A set of PyPPL processes for bioinformatics.
remotedata
Accessing and caching remote data.