19 projects
dnaio
Read and write FASTA and FASTQ files efficiently
sequali
Sequali is a QC tool that generates useful graphs for both short and long-read data.
zlib-ng
Drop-in replacement for zlib and gzip modules using zlib-ng
isal
Faster zlib and gzip compatible compression and decompression by providing python bindings for the ISA-L library.
xopen
Open compressed files transparently
pytest-workflow
A pytest plugin for configuring workflow/pipeline tests using YAML files
miniwdl-slurm
miniwdl slurm backend using singularity
array-as-vcf
Convert SNP array to VCF
fastq-filter
A fast FASTQ filter progam.
gzip-static
Compress your static website with gzip for faster serving with NGiNX's gzip_static on.
biowdl-input-converter
Converting various input formats into WDL structs for BioWDL pipelines.
collect-columns
Retrieve a column for each in a set of tables, placing them in a single output table.
chunked-scatter
Chunk and scatter the regions in a bed or sequence dict file
pytest-notification
A pytest plugin for sending a desktop notification and playing a sound upon completion of tests
singularity-permanent-cache
Creates a permanent cache for singularity images on disk.
wdl-packager
Package a WDL and its imports into a zip file.
prepull-singularity
A tool for pulling singularity images in HPC environments.
biotdg
Bioinformatics Test Data Generator
fastqsplitter
Splits FASTQ files evenly.
