73 projects
scipion-em-relion
Plugin to use Relion programs within the Scipion framework
scipion-pyworkflow
Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy.
scipion-em-motioncorr
Plugin to use motioncor programs within the Scipion framework
scipion-em-sphire
Plugin to use Sphire programs within the Scipion framework
scipion-em-tomo
Plugin to use electron tomography software within the Scipion framework
scipion-em-cryodrgn
Plugin to use cryoDRGN within the Scipion framework
scipion-em-roodmus
Roodmus plugin for Scipion
scipion-em
This modules contains classes related with EM
scipion-em-cistem
Plugin to use cisTEM programs within the Scipion framework
scipion-em-tomo3d
tomo3d and other software at https://sites.google.com/site/3demimageprocessing/Home ready to use in scipion.
scipion-em-dynamo
Plugin to use DYNAMO within the Scipion framework
scipion-em-empiar
A Scipion plugin to make depositions to EMPIAR
scipion-em-tomotwin
Plugin to use TomoTwin within the Scipion framework
scipion-em-novactf
Plugin to use NovaCTF in Scipion
scipion-em-cryosparc2
Plugin to use cryoSPARC2 programs within the Scipion framework
scipion-em-locscale
Plugin to use Locscale program within the Scipion framework
scipion-em-gctf
Plugin to use Gctf program within the Scipion framework
scipion-em-aretomo
Plugin to use AreTomo program within the Scipion framework
scipion-em-emready
EMReady: Improvement of cryo-EM maps by simultaneous local and non-local deep learning
scipion-em-reliontomo
Plugin to use Relion programs for tomography within the Scipion framework
scipion-em-imod
Plugin to use some of the Tomography tools from IMOD in Scipion
scipion-em-emantomo
Plugin to use EMAN2 tomography programs within the Scipion framework
scipion-em-tomosegmemtv
Scipion plugin for softare packages tomosegmemTV and membraneAnnotator.
scipion-em-flexutils
Tools for 3D visualization and manipulation of flexibility data
scipion-em-kiharalab
Scipion plugin in order to use ther kiharalab software
scipion-installer
Installs scipion 3 creating a virtual environment for it anc creates a launcher.
scipion-em-chimera
Plugin to use chimera programs within the Scipion framework
scipion-em-gautomatch
Plugin to use Gautomatch program within the Scipion framework
scipion-app
Scipion application. For processing cryo electron microscopy images and hybrid modelling
metadata-viewer
Generic metadata viewer
scipion-em-xmipptomo
Scipion plugin to deal with xmipp tomography protocols.
scipion-em-xmippBase
Scipion pseudoplugin to deal with the shared xmipp protocols.
scipion-em-pyseg
Scipion plugin for PySeg
scipion-em-xmipp
Plugin to use Xmipp programs within the Scipion framework (see https://scipion-em.github.io/docs/).
scipion-em-facilities
Plugin for Cryo-EM facilities to be used within Scipion framework
scipion-em-warp
Plugin to use Warp within the Scipion framework
scipion-em-eman2
Plugin to use EMAN programs within the Scipion framework
scipion-em-modelangelo
Scipion plugin for modelangelo.
scipion-em-cryocare
Plugin to use cryoCARE inside scipion.
scipion-em-susantomo
Plugin to use SUSAN within the Scipion framework
scipion-em-isonet
Scipion plugin isonet.
scipion-em-tomoviz
Tools for 3D visualization and manipulation of tomography data
scipion-em-deepfinder
Deepfinder plugin for scipion.
scipion-em-localrec
Localrec ready to use in scipion.
scipion-em-cryoef
Plugin to use Cryoef program within the Scipion framework
scipion-em-cryoassess
Plugin to use cryoassess within the Scipion framework
scipion-em-fsc3d
Plugin to use 3DFSC within the Scipion framework
scipion-em-imagic
Plugin to use IMAGIC programs within the Scipion framework
scipion-em-sidesplitter
Plugin to use SIDESPLITTER program within the Scipion framework
scipion-em-spider
Plugin to use Spider programs within the Scipion framework
scipion-em-smartscope
Plugin to manage Smartscope from Scipion
scipion-em-repic
Scipion plugin for REPIC.
scipion-em-ccp4
CCP4 model building programs in Scipion. Warning: Install CCP4 v. 7.0.56 or higher
scipion-em-topaz
Topaz ready to use in scipion.
scipion-em-pwperformance
Python module to provide performance analysis tools and storage of the metrics for a further comparison
scipion-em-atsas
Plugin to use ATSAS programs within the Scipion framework
scipion-em-phenix
PHENIX programs in Scipion. Warning: Install PHENIX v. 1-17
scipion-em-spoc
Plugin to use SPOC programs within the Scipion framework
scipion-em-bsoft
Plugin to use Cryoef program within the Scipion framework
scipion-em-xlmtools
Plugin to use xlmtools-Tools programs within the Scipion framework
scipion-em-resmap
Plugin to use ResMap program within the Scipion framework
scipion-em-xmipp2
xmipp2 ready to use in scipion.
scipion-em-atomstructutils
A Scipion plugin to manipulate atomic structure files (PDB/MMCIF)
scipion-em-emxlib
EMX_EXPORT ready to use in scipion.
scipion-em-appion
Plugin to use Appion Dogpicker within the Scipion framework
scipion-em-bamfordlab
Plugin to use Bamfordlab programs within the Scipion framework
scipion-em-bionotes
Scipion 3DBionotes plugin.
scipion-em-powerfit
Powerfit ready to use in Scipion.
scipion-em-nysbc
Plugin to use NYSBC programs within the Scipion framework
scipion-em-grigoriefflab
Grigoriefflab ready to use in scipion.
scipion-em-simple
Plugin to use Simple programs within the Scipion framework
scipion-em-esrf
Esrf's ISPyB monitor for Scipion
scipion-em-ispyb
ISPyB monitor for scipion
