vcftoolz

Last released Jun 2, 2023

Tools for working with Variant Call Format files.

snp-pipeline

Last released Sep 23, 2020

Script and functions for SNP matrix construction

jobrunner

Last released Aug 21, 2020

An abstraction layer to run jobs on HPC clusters using Grid Engine, Torque, or locally.

kyos

Last released May 13, 2020

Tools for haploid variant calling with Deep Neural Networks.

qarrayrun

Last released Apr 28, 2020

A helper tool for running array jobs on an HPC computational node.

refchooser

Last released Aug 20, 2019

Tools to help choosing a reference assembly.

snp-mutator

Last released May 15, 2019

Generate mutated sequence files from a reference genome.

fastatools

Last released Dec 10, 2018

Tools for working with fasta files.