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39 projects

pydra-niworkflows

Last released

Pydra tasks package for niworkflows

pydra-nireports

Last released

Pydra tasks package for nireports

nipype2pydra

Last released

Tool for converting Nipype tasks and workflows into Pydra syntax

pydra-afni

Last released

Pydra tasks package for afni

fileformats-medimage-afni-extras

Last released

Extensions to add functionality to tool-specific *fileformats* classes

fileformats-medimage-afni

Last released

Classes for representing different file formats in Python classes for use in type hinting in data workflows

pydra-fsl

Last released

Pydra tasks package for fsl

pydra-freesurfer

Last released

Pydra tasks package for freesurfer

pydra-ants

Last released

Pydra tasks package for ANTs

xnat

Last released

An XNAT client that exposes the XNAT REST interface as python objects. Part of the interface is automatically generated based on the servers data model as defined by the xnat schema.

fileformats-medimage-fsl-extras

Last released

Extensions to add functionality to tool-specific *fileformats* classes

fileformats-medimage-fsl

Last released

Classes for representing different file formats in Python classes for use in type hinting in data workflows

pydra-fastsurfer

Last released

Pydra tasks package for fastsurfer

pydra-mrtrix3

Last released

pydra-mrtrix3 contains Pydra task specifications for MRtrix3 tools

fileformats-medimage-mrtrix3

Last released

Classes for representing different file formats in Python classes for use in type hinting in data workflows

fileformats-medimage-extras

Last released

Classes for representing different file formats in Python classes for use in type hinting in data workflows

fileformats-medimage

Last released

Classes for representing various medical imaging file formats in Python classes for use in type hinting in data workflows

fileformats-extras

Last released

Extra methods for accessing and manipulating the underlying data referenced by fileformats classes

fileformats

Last released

Classes for representing different file formats in Python classes for use in type hinting in data workflows

pydra-nipype1

Last released

Tools for importing nipype 1.x interfaces into Pydra

arcana

Last released

Abstraction of Repository-Centric ANAlysis (Arcana): A framework for analysing on file-based datasets "in-place" (i.e. without manual download)

fileformats-datascience

Last released

Classes for representing datascience file formats in Python classes for use in type hinting in data workflows

fileformats-medimage-mrtrix3-extras

Last released

Classes for representing different file formats in Python classes for use in type hinting in data workflows

arcana-xnat

Last released

An extension of the Arcana framework to apply workflows and analyses on data stored within XNAT data repositories

xnat4tests

Last released

Creates basic XNAT instance for API tests

medimages4tests

Last released

Generates dummy medical image data with realistic headers to be used in image handling tests

fileformats-mrtrix3-extras

Last released

Classes for representing different file formats in Python classes for use in type hinting in data workflows

arcana-bids

Last released

An Arcana extension for interacting with Brain Imaging Structure (BIDS) datasets and associated "Apps"

fileformats-datascience-extras

Last released

Classes for representing different file formats in Python classes for use in type hinting in data workflows

pydra-dcm2niix

Last released

Provides a task interface for the popular dcm2niix DICOM to NIfTI converter

fileformats-testing

Last released

Dummy classes for testing the 'fileformats' package

xnatutils

Last released

A collection of scripts for downloading/uploading and listing data from XNAT repositories.

arcana-testing

Last released

Dummy classes for testing the Arcana framework

dds4xnat

Last released

Renames the scan type for MR sessions stored on XNAT using the DeepDicomSort algorithm

banana

Last released

Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework (arcana.readthedocs.io)

nineml

Last released

A tool for reading, writing and generally working with 9ML objects and files.

ninemlcatalog

Last released

A collection of 9ML models and basic Python functions for accessing them

pype9

Last released

PYthon PipelinEs for 9ML (Pype9) is a collection of Python pipelines for simulating networks of neuron models described in 9ML with various simulator backends.

Diophantine

Last released

A python package for finding small solutions of systems of diophantine (integer algebra) equations

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