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Thomas G. Close

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12 projects

pydra-dcm2niix

Last released

Provides a task interface for the popular dcm2niix DICOM to NIfTI converter

medimages4tests

Last released

Generates dummy medical image data with realistic headers to be used in image handling tests

xnat4tests

Last released

Creates basic XNAT instance for API tests

dds4xnat

Last released

Renames the scan type for MR sessions stored on XNAT using the DeepDicomSort algorithm

xnat

Last released

An XNAT client that exposes the XNAT REST interface as python objects. Part of the interface is automatically generated based on the servers data model as defined by the xnat schema.

xnatutils

Last released

A collection of scripts for downloading/uploading and listing data from XNAT repositories.

arcana

Last released

Abstracted repository-centric analysis framework

banana

Last released

Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework (arcana.readthedocs.io)

nineml

Last released

A tool for reading, writing and generally working with 9ML objects and files.

ninemlcatalog

Last released

A collection of 9ML models and basic Python functions for accessing them

pype9

Last released

PYthon PipelinEs for 9ML (Pype9) is a collection of Python pipelines for simulating networks of neuron models described in 9ML with various simulator backends.

Diophantine

Last released

A python package for finding small solutions of systems of diophantine (integer algebra) equations

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