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Terry Jones

Username    terrycojones

20 projects

dark-matter

Last released

Python classes for working with genetic sequence data

sars2seq

Last released

Python library and scripts for working with SARS-CoV-2 sequences.

slurm-pipeline

Last released

A Python class and utility script for scheduling SLURM jobs

beast2-xml

Last released

Command line script and Python class for generating BEAST2 XML config files.

pystdin

Last released

Wrap command-line Python code in a loop over standard input.

midtools

Last released

Command line scripts and Python classes for detecting multiple infections from NGS reads.

rpnpy

Last released

Control an RPN calculator from Python.

daudin

Last released

A UNIX command-line shell based on Python

py3seq

Last released

Python class providing an interface to the 3seq recombination detection program.

phylo-color

Last released

Color the nodes of a phylogenetic tree using regular expressions to match taxa names.

sausage-machine

Last released

A Python class for running / scheduling pipeline jobs

seqgen

Last released

Command line script and Python class for generating genetic sequence data in FASTA format.

gor4

Last released

Python class providing an interface to GOR4 amino acid structure prediction C code.

txretry

Last released

A Twisted class for retrying failing calls with a customizable back-off schedule.

txRDQ

Last released

A Twisted class for queueing and dispatching jobs in a controlled manner.

txdlo

Last released

A Twisted class for observing a set of deferreds.

Fom

Last released

FluidDB API and Object Mapper

shared_clipboard

Last released

Classes for saving, retrieving and clearing shared clipboards stored in Fluidinfo.

txdpce

Last released

A Twisted class for parallel execution of functions performing the same task, returning the result from the one that finishes first.

compset

Last released

A Python set class that allows complements.

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