Python library and scripts for working with unannotated sequences based on an annotated reference genome provided by a GenBank file.
Python classes and utility scripts for working with genetic sequence data.
Command line script and Python class for generating genetic sequence data in FASTA format.
A Python class and utility script for scheduling SLURM jobs
Python library and scripts for working with SARS-CoV-2 sequences.
Command line script and Python class for generating BEAST2 XML config files.
Wrap command-line Python code in a loop over standard input.
Command line scripts and Python classes for detecting multiple infections from NGS reads.
Control an RPN calculator from Python.
A UNIX command-line shell based on Python
Python class providing an interface to the 3seq recombination detection program.
Color the nodes of a phylogenetic tree using regular expressions to match taxa names.
A Python class for running / scheduling pipeline jobs
Python class providing an interface to GOR4 amino acid structure prediction C code.
A Twisted class for retrying failing calls with a customizable back-off schedule.
A Twisted class for queueing and dispatching jobs in a controlled manner.
A Twisted class for observing a set of deferreds.
FluidDB API and Object Mapper
Classes for saving, retrieving and clearing shared clipboards stored in Fluidinfo.
A Twisted class for parallel execution of functions performing the same task, returning the result from the one that finishes first.
A Python set class that allows complements.