151 projects
ngff-zarr
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
itk-labelerodedilate
An ITK module for erode and dilate operations on label images
cmake
CMake is an open-source, cross-platform family of tools designed to build, test and package software
itk-minimalpathextraction
A minimal path extraction framework based on Fast Marching arrival functions.
itk_napari_conversion
Convert between itk and napari data structures
itk-segmentation
ITK is an open-source toolkit for multidimensional image analysis
itk-registration
ITK is an open-source toolkit for multidimensional image analysis
itk-numerics
ITK is an open-source toolkit for multidimensional image analysis
itk-io
ITK is an open-source toolkit for multidimensional image analysis
itk-filtering
ITK is an open-source toolkit for multidimensional image analysis
itk-core
ITK is an open-source toolkit for multidimensional image analysis
itk
ITK is an open-source toolkit for multidimensional image analysis
itk-ioscanco
An ITK module to read and write Scanco microCT .isq files.
itk-twoprojectionregistration
ITK classes for two-projection 2D/3D registration
itk-iofdf
ITK `ImageIO` class to read or write the FDF image format
itk-higherorderaccurategradient
itk-higherorderaccurategradient provides higher order
itk-subdivisionquadedgemeshfilter
ITK classes for triangle mesh subdivision
itk-iomeshstl
MeshIO class to read and write ITK meshes into STL files.
itk-fastbilateral
Faster implementation of the itkBilateralImageFilter. From the insight journal submission: https://www.insight-journal.org/browse/publication/692
itk-growcut
Segments a 3D image from foreground and background seeds.
itk-boneenhancement
Various filters for enhancing cortical bones in quantitative computed tomography.
itk-montage
Montaging for microscopy imaging files.
itk-morphologicalcontourinterpolation
A morphology-based approach for interslice interpolation of anatomical slices from volumetric images.
multiscale-spatial-image
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can be serialized to OME-NGFF.
itkwasm-mesh-io
Input and output for scientific and medical mesh file formats.
itkwasm-mesh-io-emscripten
Input and output for scientific and medical image file formats.
itkwasm-mesh-io-wasi
Input and output for scientific and medical image file formats.
itkwasm-dicom
Read files and images related to DICOM file format.
itkwasm-dicom-emscripten
None
itkwasm-dicom-wasi
None
itkwasm-compare-images
Compare images with a tolerance for regression testing.
itkwasm-compare-images-emscripten
None
itkwasm-compare-images-wasi
None
itkwasm-downsample
Pipelines for downsampling images.
itkwasm-downsample-emscripten
Pipelines for downsampling images.
itkwasm-downsample-wasi
Pipelines for downsampling images.
itk-fpfh
The feature points could be used obtain salient points while performing registration using RANSAC remote module. The class PointFeature is the main driver that takes a PointSet as argument. Please refer to the documentation for a detailed description and sample usage: https://github.com/InsightSoftwareConsortium/ITKFPFH
itkwasm-elastix
None
itkwasm-elastix-emscripten
None
itkwasm-elastix-wasi
None
itk-cuberille
Cuberille implicit surface polygonization to generate meshes from images.
scikit-build-core
Build backend for CMake based projects
itkwasm
Python interface to itk-wasm WebAssembly (Wasm) modules.
spatial_image
A multi-dimensional spatial image data structure for scientific Python.
itk-skullstripping
Automatic skull-stripping for neuroimage analysis
ngff-zarr-mcp
Model Context Protocol server for OME-Zarr image conversion
itkwasm-transform
Common operations with and on spatial transformations.
itkwasm-transform-emscripten
Common operations with and on spatial transformations.
itkwasm-transform-wasi
Common operations with and on spatial transformations.
itk-splitcomponents
ITK filters to split a multi-component pixel image into component-wise scalar images
itkwasm-morphological-contour-interpolation
Morphology-based approach for interslice interpolation of anatomical slices from volumetric images.
itkwasm-morphological-contour-interpolation-emscripten
Morphology-based approach for interslice interpolation of anatomical slices from volumetric images.
itkwasm-morphological-contour-interpolation-wasi
Morphology-based approach for interslice interpolation of anatomical slices from volumetric images.
itk-elastix
Provides an ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
itk-tubetk
An open-source toolkit, led by Kitware, Inc., for the segmentation, registration, and analysis of tubes (e.g., blood vessels) in images.
pygccxml
Python package for easy C++ declarations navigation.
itk-texturefeatures
An ITK module to compute N-dimension grayscale texture feature images
itk-iomeshmz3
ITK Mesh IO for the MZ3 format, a simple, small, fast triangle mesh file format.
itk-meshtopolydata
Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.
itk-bonemorphometry
An ITK module to compute bone morphometry features and feature maps
itk-genericlabelinterpolator
ITK classes for generic interpolation of label images.
itkwasm-transform-io
Input and output for scientific and medical coordinate transform file formats.
itkwasm-transform-io-emscripten
Input and output for scientific and medical coordinate transform file formats.
itkwasm-transform-io-wasi
Input and output for scientific and medical coordinate transform file formats.
itkwasm-mesh-filters
Mesh filters to repair, remesh, subdivide, decimate, smooth, triangulate, etc.
itkwasm-mesh-filters-emscripten
Mesh filters to repair, remesh, subdivide, decimate, smooth, triangulate, etc.
itkwasm-mesh-filters-wasi
Mesh filters to repair, remesh, subdivide, decimate, smooth, triangulate, etc.
itkwasm-image-io
Input and output for scientific and medical image file formats.
itkwasm-image-io-emscripten
Input and output for scientific and medical image file formats.
itkwasm-image-io-wasi
Input and output for scientific and medical image file formats.
itkwasm-compress-stringify
Zstandard compression and decompression and base64 encoding and decoding in WebAssembly.
itkwasm-compress-stringify-emscripten
None
itkwasm-compress-stringify-wasi
None
itkwasm-compare-meshes
Compare meshes and polydata for regression testing.
itkwasm-compare-meshes-emscripten
Compare meshes and polydata for regression testing.
itkwasm-compare-meshes-wasi
Compare meshes and polydata for regression testing.
itkwidgets
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
itk-ants
Advanced Normalization Tools in WebAssembly
itk-rleimage
ITKRLEImage provides run-length encoded storage for ITK images
itkwasm-cuberille-wasi
Cuberille implicit surface polygonization
napari-itk-io
File IO with itk for napari
itkwasm-mesh-to-poly-data
Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.
itkwasm-mesh-to-poly-data-emscripten
Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.
itkwasm-mesh-to-poly-data-wasi
Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.
itk-shape
A C++ implementation of Procrustes alignment for 3D meshes.
itk-nornir
Nornir's takes large sets of overlapping images in 2D and produces registered (a.k.a. aligned) 2D and 3D volumes of any size and scale.
scikit-build
Improved build system generator for Python C/C++/Fortran/Cython extensions
lung-sarg
None
itkwasm-htj2k
None
itkwasm-htj2k-emscripten
None
itkwasm-htj2k-wasi
None
itk-parabolicmorphology
itk-parabolicmorphology provides mathematical morphological erosion and dilation filters using parabolic structuring functions.
itk-ioopenjph
An ITK module to read and write High-throughput JPEG2000 (HTJ2K) images.
itk-strain
ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation
itk-simpleitkfilters
This module contains a collension of ITK Filters used by SimpleITK. These filter are usefull to SimpleITK in that they may wrap existing ITK filters with an interface expected by SimpleITK, or may add important basic filters needed for completeness.
itk-totalvariation
TotalVariation algorithms, providing a wrap for the external project: https://github.com/albarji/proxTV
itk-thickness3d
An ITK module to compute 3D thickness
itk-ringartifact
ITK filters to reduce stripe artifacts or ring artifacts common in X-ray computed tomography, focused ion beam images, etc.
itk-meshnoise
Classes to perturb mesh objects with Gaussian noise
itk-ioomezarrngff
IO for images stored in the OME-Zarr format.
itk-phasesymmetry
itk-phasesymmetry provides multi-scale steerable filters
itk-ransac
It supports feature based registration and can be used along with the FPFH remote module. The class itkRANSAC is the main driver that takes an object of class itkLandmarkRegistrationEstimator as argument. Please refer to the documentation for a detailed description and sample usage: https://github.com/InsightSoftwareConsortium/ITKRANSAC.
itkwasm-sub-mesh
Extract a subset of a mesh given by the cell identifiers.
itkwasm-sub-mesh-wasi
Extract a subset of a mesh given by the cell identifiers.
itk-webassemblyinterface
IO with the itk-wasm file formats
compare-meshes
Compare meshes and polydata for regression testing.
compare-meshes-emscripten
Compare meshes and polydata for regression testing.
compare-meshes-wasi
Compare meshes and polydata for regression testing.
itk-viewer-agave-renderer
None
itkwasm-downsample-cucim
Pipelines for downsampling images. cuCIM implementation.
itk-dreg
ITK-DREG Distributed registration framework.
pytest-web3-data
A pytest plugin to fetch test data from IPFS HTTP gateways during pytest execution.
itk-viewer-remote-image
None
oai-analysis
Image analysis for the Osteoarthritis Initiative (OAI) knee magnetic resonance image (MRI) dataset.
itk-isotropicwavelets
Steerable Wavelet Pyramid with Isotropic Wavelets and Riesz Functions
itk-ultrasound
Filters for use with the Insight Toolkit (ITK) that may be particularly useful for the reconstruction and analysis of ultrasound images.
itk-cleaver
An ITK interface to the Cleaver multi-material tetrahedral meshing library
itk-iomeshswc
ITK module for reading meshes from SWC files, a format for representing neuron morphology.
itk-pocus
ITKPOCUS - an open source library for image processing and AI of point-of-care ultrasound, based on ITK (https://pypi.org/project/itk/)
itk-vkfft
VkFFT backends for ITK FFT classes.
itk-bsplinegradient
Approximate an image's gradient from a B-spline fit to its intensity.
vtk-addon
General-purpose features that may be integrated into VTK library in the future.
itk-clesperanto
ITK filters accelerated with OpenCL.
shardedstore
Provides a sharded Zarr store.
spatial_image_multiscale
spatial-image-multiscale
tensorboard-plugin-3d
TensorBoard plugin for 3D visualization
spatial_image_ngff
spatial-image-ngff
itk_cucim
ITK Python filters accelerated with cuCIM.
itk-thinshelldemons
Thin Shell Demons for Surface to Surface Registration
itk-iomgh
An ITK module to support input and output of the MGH file format.
itk-elastix-opencl
Provides an ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
itk-anisotropicdiffusionlbr
Smooth images while preserving edges or coherent structures.
itk-hasi
High-throughput Applications for Skeletal Imaging
hasi
High-throughput Applications for Skeletal Imaging (HASI) Python content
itk-ndreg
This is the Neurodata open-source Python package that performs affine and deformable (LDDMM) image registration.
simtk
sim: structured illumination microscopy
itk-smoothingrecursiveyvvgaussianfilter
Young & Van Vliet recursive Gaussian smoothing filter for GPU (OpenCL) and CPU
itk-polartransform
This module contains ITK classes to transform from cartesian to polar coordinate systems and back.
itk-principalcomponentsanalysis
ITK classes for the analysis of the principal components of data sets, optionally point data associated with the vertices of a mesh.
itk-fixedpointinversedisplacementfield
Takes a displacement field as input and computes the displacement field that is its inverse.
ccfwidget
A Jupyter widget for the Allen Common Coordinate Framework (CCF) Mouse Brain Atlas.
itk-gpusmoothing
Common smoothing filters accelerated with OpenCL.
itk-gpuimagefilterbase
Base classes for ITK image filters accelerated with OpenCL.
itk-gpufinitedifference
Base classes for ITK finite difference filters accelerated with OpenCL.
itk-gpucommon
Core classes for ITK filters accelerated with OpenCL.
itk-vtkglue
This module contains classes that bridge and ITK and VTK image processing and visualization pipeline.
scikit-ci
scikit-ci enables a centralized and simpler CI configuration for Python extensions.
scikit-ci-addons
scikit-ci-addons is a command line tool and a set of scripts useful to help drive the CI of projects leveraging services like Appveyor, CircleCI, or TravisCI.
jinja2-github
Jinja2 Extension for rendering GitHub project properties
itk-krcahsheetness
ITK filters to generate a sheetness feature image useful for segmenting bone in CT images and similar applications.
sphinx-foundation-theme
A Sphinx HTML theme that uses Zurb foundation-sites.
