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Matthew McCormick

Username    thewtex
Date joined   Joined

129 projects

itkwasm-downsample-cucim

Last released

Pipelines for downsampling images. cuCIM implementation.

itkwasm

Last released

Python interface to itk-wasm WebAssembly (Wasm) modules.

itkwasm-sub-mesh

Last released

Extract a subset of a mesh given by the cell identifiers.

itkwasm-sub-mesh-wasi

Last released

Extract a subset of a mesh given by the cell identifiers.

itkwasm-morphological-contour-interpolation

Last released

Morphology-based approach for interslice interpolation of anatomical slices from volumetric images.

itkwasm-morphological-contour-interpolation-emscripten

Last released

Morphology-based approach for interslice interpolation of anatomical slices from volumetric images.

itkwasm-morphological-contour-interpolation-wasi

Last released

Morphology-based approach for interslice interpolation of anatomical slices from volumetric images.

scikit-build-core

Last released

Build backend for CMake based projects

cmake

Last released

CMake is an open-source, cross-platform family of tools designed to build, test and package software

itkwasm-mesh-to-poly-data

Last released

Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.

itkwasm-mesh-to-poly-data-emscripten

Last released

Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.

itkwasm-mesh-to-poly-data-wasi

Last released

Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.

itkwidgets

Last released

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

itk-ants

Last released

Advanced Normalization Tools in WebAssembly

ngff-zarr

Last released

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

itkwasm-downsample

Last released

Pipelines for downsampling images.

itkwasm-downsample-emscripten

Last released

Pipelines for downsampling images.

itkwasm-downsample-wasi

Last released

Pipelines for downsampling images.

itkwasm-compare-images

Last released

Compare images with a tolerance for regression testing.

itkwasm-compare-images-emscripten

Last released

itkwasm-compare-images-wasi

Last released

itk-tubetk

Last released

An open-source toolkit, led by Kitware, Inc., for the segmentation, registration, and analysis of tubes (e.g., blood vessels) in images.

itkwasm-dicom

Last released

Read files and images related to DICOM file format.

itkwasm-dicom-emscripten

Last released

None

itkwasm-dicom-wasi

Last released

None

itkwasm-mesh-io

Last released

Input and output for scientific and medical image file formats.

itkwasm-mesh-io-emscripten

Last released

Input and output for scientific and medical image file formats.

itkwasm-mesh-io-wasi

Last released

Input and output for scientific and medical image file formats.

itkwasm-image-io

Last released

Input and output for scientific and medical image file formats.

itkwasm-image-io-emscripten

Last released

Input and output for scientific and medical image file formats.

itkwasm-image-io-wasi

Last released

Input and output for scientific and medical image file formats.

itkwasm-compress-stringify

Last released

Zstandard compression and decompression and base64 encoding and decoding in WebAssembly.

itkwasm-compress-stringify-emscripten

Last released

None

itkwasm-compress-stringify-wasi

Last released

None

itk-growcut

Last released

Segments a 3D image from foreground and background seeds.

itk-dreg

Last released

ITK-DREG Distributed registration framework.

itkwasm-htj2k

Last released

itkwasm-htj2k-emscripten

Last released

itkwasm-htj2k-wasi

Last released

itk-ioomezarrngff

Last released

IO for images stored in zarr format.

itk-genericlabelinterpolator

Last released

ITK classes for generic interpolation of label images.

itk-elastix

Last released

Provides an ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

itk-segmentation

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-registration

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-numerics

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-io

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-filtering

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-core

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk

Last released

ITK is an open-source toolkit for multidimensional image analysis

itk-viewer-agave-renderer

Last released

None

multiscale-spatial-image

Last released

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can be serialized to OME-NGFF.

spatial-image

Last released

spatial-image

pytest-web3-data

Last released

A pytest plugin to fetch test data from IPFS HTTP gateways during pytest execution.

itkwasm-elastix

Last released

itkwasm-elastix-emscripten

Last released

itkwasm-elastix-wasi

Last released

itk-viewer-remote-image

Last released

None

oai-analysis

Last released

Image analysis for the Osteoarthritis Initiative (OAI) knee magnetic resonance image (MRI) dataset.

itk-ioopenjph

Last released

An ITK module to read and write High-throughput JPEG2000 (HTJ2K) images.

itk-isotropicwavelets

Last released

Steerable Wavelet Pyramid with Isotropic Wavelets and Riesz Functions

pygccxml

Last released

Python package for easy C++ declarations navigation.

itk-webassemblyinterface

Last released

IO with the itk-wasm file formats

itk-totalvariation

Last released

TotalVariation algorithms, providing a wrap for the external project: https://github.com/albarji/proxTV

itk-meshtopolydata

Last released

Convert an ITK Mesh to a simple data structure compatible with vtkPolyData.

itk-ultrasound

Last released

Filters for use with the Insight Toolkit (ITK) that may be particularly useful for the reconstruction and analysis of ultrasound images.

scikit-build

Last released

Improved build system generator for Python C/C++/Fortran/Cython extensions

napari-itk-io

Last released

File IO with itk for napari

itk-parabolicmorphology

Last released

ITK classes for mathematical morphology using parabolic structuring functions

itk-cleaver

Last released

An ITK interface to the Cleaver multi-material tetrahedral meshing library

itk-labelerodedilate

Last released

An ITK module for erode and dilate operations on label images

itk-minimalpathextraction

Last released

A minimal path extraction framework based on Fast Marching arrival functions.

itk-ransac

Last released

An ITK-based implementation of RANSAC used for point cloud registration.

itk-texturefeatures

Last released

An ITK module to compute N-dimension grayscale texture feature images

itk-iomeshswc

Last released

ITK module for reading meshes from SWC files, a format for representing neuron morphology.

itk-iomeshstl

Last released

MeshIO class to read and write ITK meshes into STL files.

itk-bonemorphometry

Last released

An ITK module to compute bone morphometry features and feature maps

itk-thickness3d

Last released

An ITK module to compute 3D thickness

itk-cuberille

Last released

This module implements cuberille implicit surface polygonization for ITK.

itk-montage

Last released

Montaging for microscopy imaging files.

itk-shape

Last released

A C++ implementation of Procrustes alignment for 3D meshes.

itk-morphologicalcontourinterpolation

Last released

Image morphological contour interpolation.

itk-fpfh

Last released

An ITK-based implementation of FPFH (Fast Point Feature Histogram) used for point cloud feature calculation.

itk-pocus

Last released

ITKPOCUS - an open source library for image processing and AI of point-of-care ultrasound, based on ITK (https://pypi.org/project/itk/)

itk-vkfft

Last released

VkFFT backends for ITK FFT classes.

itk-higherorderaccurategradient

Last released

ITK filters to estimate higher order accurate derivative and gradients

itk-strain

Last released

ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation

itk-ioscanco

Last released

An ITK module to read and write Scanco microCT .isq files.

itk-bsplinegradient

Last released

Approximate an image's gradient from a B-spline fit to its intensity.

itk-splitcomponents

Last released

ITK filters to split a multi-component pixel image into component-wise scalar images

vtk-addon

Last released

General-purpose features that may be integrated into VTK library in the future.

itk-clesperanto

Last released

ITK filters accelerated with OpenCL.

shardedstore

Last released

Provides a sharded Zarr store.

spatial_image_multiscale

Last released

spatial-image-multiscale

tensorboard-plugin-3d

Last released

TensorBoard plugin for 3D visualization

spatial_image_ngff

Last released

spatial-image-ngff

itk_cucim

Last released

ITK Python filters accelerated with cuCIM.

itk-thinshelldemons

Last released

Thin Shell Demons for Surface to Surface Registration

itk-phasesymmetry

Last released

ITK classes for computing phase symmetry using multi-scale steerable filters

itk-iomgh

Last released

An ITK module to support input and output of the MGH file format.

itk-boneenhancement

Last released

Various filters for enhancing cortical bones in quantitative computed tomography.

itk-elastix-opencl

Last released

Provides an ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

itk-iofdf

Last released

ITK `ImageIO` class to read or write the FDF image format

itk-anisotropicdiffusionlbr

Last released

Smooth images while preserving edges or coherent structures.

itk-hasi

Last released

High-throughput Applications for Skeletal Imaging

hasi

Last released

High-throughput Applications for Skeletal Imaging (HASI) Python content

itk-skullstripping

Last released

Automatic skull-stripping for neuroimage analysis

itk_napari_conversion

Last released

Convert between itk and napari data structures.

itk-ndreg

Last released

This is the Neurodata open-source Python package that performs affine and deformable (LDDMM) image registration.

simtk

Last released

sim: structured illumination microscopy

itk-smoothingrecursiveyvvgaussianfilter

Last released

Young & Van Vliet recursive Gaussian smoothing filter for GPU (OpenCL) and CPU

itk-polartransform

Last released

This module contains ITK classes to transform from cartesian to polar coordinate systems and back.

itk-principalcomponentsanalysis

Last released

ITK classes for the analysis of the principal components of data sets, optionally point data associated with the vertices of a mesh.

itk-fixedpointinversedisplacementfield

Last released

Takes a displacement field as input and computes the displacement field that is its inverse.

itk-simpleitkfilters

Last released

This module contains a collension of ITK Filters used by SimpleITK. These filter are usefull to SimpleITK in that they may wrap existing ITK filters with an interface expected by SimpleITK, or may add important basic filters needed for completeness.

ccfwidget

Last released

A Jupyter widget for the Allen Common Coordinate Framework (CCF) Mouse Brain Atlas.

itk-meshnoise

Last released

Classes to perturb mesh objects with Gaussian noise

itk-ringartifact

Last released

ITK filters to reduce stripe artifacts or ring artifacts common in x-ray computed tomography, focused ion beam images, etc.

itk-twoprojectionregistration

Last released

ITK classes for two-projection 2D/3D registration

itk-subdivisionquadedgemeshfilter

Last released

ITK classes for triangle mesh subdivision

itk-gpusmoothing

Last released

Common smoothing filters accelerated with OpenCL.

itk-gpuimagefilterbase

Last released

Base classes for ITK image filters accelerated with OpenCL.

itk-gpufinitedifference

Last released

Base classes for ITK finite difference filters accelerated with OpenCL.

itk-gpucommon

Last released

Core classes for ITK filters accelerated with OpenCL.

itk-vtkglue

Last released

This module contains classes that bridge and ITK and VTK image processing and visualization pipeline.

scikit-ci

Last released

scikit-ci enables a centralized and simpler CI configuration for Python extensions.

scikit-ci-addons

Last released

scikit-ci-addons is a command line tool and a set of scripts useful to help drive the CI of projects leveraging services like Appveyor, CircleCI, or TravisCI.

jinja2-github

Last released

Jinja2 Extension for rendering GitHub project properties

itk-krcahsheetness

Last released

ITK filters to generate a sheetness feature image useful for segmenting bone in CT images and similar applications.

sphinx-foundation-theme

Last released

A Sphinx HTML theme that uses Zurb foundation-sites.

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