14 projects
varcode
Variant annotation in Python
pyensembl
Python interface to Ensembl reference genome metadata
mhcflurry
MHC Binding Predictor
datacache
Helpers for transparently downloading datasets
mhctools
Python interface to running command-line and web-based MHC binding predictors
gtfparse
Parsing library for extracting data frames of genomic features from GTF files
phipkit
PhIP-seq analysis library
yabul
Yet Another Bioinformatics Utilities Library
topiary
Predict cancer epitopes from cancer sequence data
mhcnames
Python library for MHC nomenclature parsing
pepdata
Immunological peptide datasets and amino acid properties
pyopen
launch an interactive ipython session with specified files opened and parsed
varlens
commandline manipulation of genomic variants and NGS reads
sefara
Practical dataset management