Tim O'Donnell

pyensembl

Last released Aug 17, 2023

Python interface to ensembl reference genome metadata

gtfparse

Last released Dec 22, 2022

GTF Parsing

datacache

Last released Dec 20, 2022

Helpers for transparently downloading datasets

varcode

Last released Nov 29, 2022

Variant annotation in Python

mhcflurry

Last released Jun 8, 2022

MHC Binding Predictor

phipkit

Last released Mar 6, 2021

PhIP-seq analysis library

yabul

Last released Mar 4, 2021

Yet Another Bioinformatics Utilities Library

mhctools

Last released Oct 9, 2020

Python interface to running command-line and web-based MHC binding predictors

topiary

Last released Feb 26, 2018

Predict cancer epitopes from cancer sequence data

mhcnames

Last released Feb 26, 2018

Python library for MHC nomenclature parsing

pepdata

Last released Feb 26, 2018

Immunological peptide datasets and amino acid properties

pyopen

Last released Jan 30, 2018

launch an interactive ipython session with specified files opened and parsed

varlens

Last released Apr 14, 2016

commandline manipulation of genomic variants and NGS reads

sefara

Last released Jul 6, 2015

Practical dataset management