16 projects
mhcflurry
MHC Binding Predictor
pyensembl
Python interface to Ensembl reference genome metadata
datacache
Helpers for transparently downloading datasets
varcode
Variant annotation in Python
pyconfind
Fast Python implementation of confind — protein side-chain contact-degree analysis.
topiary
Predict, filter, and rank MHC-presented peptides from any antigen source
gtfparse
Parsing library for extracting data frames of genomic features from GTF files
mhctools
Python interface to MHC binding, presentation, immunogenicity, and antigen processing predictors
boltzgen
Protein design
pepdata
Immunological peptide datasets and amino acid properties
phipkit
PhIP-seq analysis library
yabul
Yet Another Bioinformatics Utilities Library
mhcnames
Python library for MHC nomenclature parsing
pyopen
launch an interactive ipython session with specified files opened and parsed
varlens
commandline manipulation of genomic variants and NGS reads
sefara
Practical dataset management
