6 projects
cazy-webscraper
A tool to automate retrieving data from CAZy, build a local CAZyme SQL database, and throughly interrogating the data. Also, automate retrieving protein data, sequences, EC numbers and structure files for specific datasets in the CAZyme database from UniProt, GenBank and PDB.
saintBioutils
A package of utility and miscellaneous functions for using in bioinformaticspipelines, primarily in Python.
pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
ncfp
ncfp is a script and module that facilitates recovery of nucleotide sequences from NCBI encoding a specified set of input protein sequences
lpbio
lpbio provides scripts and modules for computational biology
pyadhore
pyADHoRe provides a data structure for import and manipulation of i-ADHoRe output.
