25 projects
fastmorph
Morphological image processing for 3D multi-label images.
cloud-files
Fast access to cloud storage and local FS.
connected-components-3d
Connected components on discrete and continuous multilabel 3D and 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6).
igneous-pipeline
Manage, Downsample, Mesh, Skeletonize, and Transform Neuroglancer Datasets
DracoPy
Python wrapper for Google's Draco Mesh Compression Library
cloud-volume
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.
zmesh
Multilabel marching cubes and simplification of volumetric data.
microviewer
Visualize 3D numpy arrays in the browser.
kimimaro
Skeletonize densely labeled image volumes.
crackle-codec
Crackle 3D dense segmentation compression codec.
fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
dijkstra3d
Implementation of Dijkstra's Shortest Path algorithm on 3D images.
tinybrain
Image pyramid generation specialized for connectomics data types and procedures.
shard-computer
A library for rapid computation of Neuroglancer Precomputed shard hashes.
pyspng-seunglab
Fast libspng-based PNG decoder. Fork of pyspng.
mapbuffer
Serializable map of integers to bytes with near zero parsing.
compressed-segmentation
Neuroglancer compressed_segmentation codec.
compresso
compresso algorithm variant based on work by Matejek et al.
fpzip
Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)
xs3d
Compute cross sectional area of 3d shapes.
fill-voids
Fill voids in 3D binary images fast.
edt
Multi-Label Anisotropic Euclidean Distance Transform 3D
task-queue
Multithreaded cloud queue client.
zfpc
zfp container (zfpc) for optimal compression of 1D-4D arrays by representing correlated dimensions as separate zfp streams.
contact-points
Find contact points in a 3D Volume.
