26 projects
cloud-volume
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.
zmesh
Multilabel marching cubes and simplification of volumetric data.
cloud-files
Fast access to cloud storage and local FS.
kimimaro
Skeletonize densely labeled image volumes.
osteoid
Skeleton object used for representing neurons, adjacent cells, and organelles.
mapbuffer
Serializable map of integers to bytes with near zero parsing.
edt
Multi-Label Anisotropic Euclidean Distance Transform 3D
microviewer
Visualize 3D numpy arrays in the browser.
DracoPy
Python wrapper for Google's Draco Mesh Compression Library
dijkstra3d
Implementation of Dijkstra's Shortest Path algorithm on 3D images.
connected-components-3d
Connected components on discrete and continuous multilabel 3D and 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6).
crackle-codec
Crackle 3D dense segmentation compression codec.
fastmorph
Morphological image processing for 3D multi-label images.
xs3d
Compute cross sectional area of 3d shapes.
igneous-pipeline
Manage, Downsample, Mesh, Skeletonize, and Transform Neuroglancer Datasets
fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
fill-voids
Fill voids in 3D binary images fast.
task-queue
Multithreaded cloud queue client.
fpzip
Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)
shard-computer
A library for rapid computation of Neuroglancer Precomputed shard hashes.
compresso
compresso algorithm variant based on work by Matejek et al.
tinybrain
Image pyramid generation specialized for connectomics data types and procedures.
compressed-segmentation
Neuroglancer compressed_segmentation codec.
pyspng-seunglab
Fast libspng-based PNG decoder. Fork of pyspng.
zfpc
zfp container (zfpc) for optimal compression of 1D-4D arrays by representing correlated dimensions as separate zfp streams.
contact-points
Find contact points in a 3D Volume.
