25 projects
connected-components-3d
Connected components on discrete and continuous multilabel 3D and 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6).
dijkstra3d
Implementation of Dijkstra's Shortest Path algorithm on 3D images.
cloud-volume
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.
xs3d
Compute cross sectional area of 3d shapes.
compressed-segmentation
Neuroglancer compressed_segmentation codec.
crackle-codec
Crackle 3D dense segmentation compression codec.
microviewer
Visualize 3D numpy arrays in the browser.
cloud-files
Fast access to cloud storage and local FS.
compresso
compresso algorithm variant based on work by Matejek et al.
edt
Multi-Label Anisotropic Euclidean Distance Transform 3D
igneous-pipeline
Manage, Downsample, Mesh, Skeletonize, and Transform Neuroglancer Datasets
mapbuffer
Serializable map of integers to bytes with near zero parsing.
kimimaro
Skeletonize densely labeled image volumes.
DracoPy
Python wrapper for Google's Draco Mesh Compression Library
fastmorph
Morphological image processing for 3D multi-label images.
pyspng-seunglab
Fast libspng-based PNG decoder. Fork of pyspng.
tinybrain
Image pyramid generation specialized for connectomics data types and procedures.
shard-computer
A library for rapid computation of Neuroglancer Precomputed shard hashes.
fpzip
Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)
fill-voids
Fill voids in 3D binary images fast.
fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
zmesh
Multilabel marching cubes and simplification of volumetric data.
task-queue
Multithreaded cloud queue client.
zfpc
zfp container (zfpc) for optimal compression of 1D-4D arrays by representing correlated dimensions as separate zfp streams.
contact-points
Find contact points in a 3D Volume.
