edt

Last released May 20, 2022

Multi-Label Anisotropic Euclidean Distance Transform 3D

connected-components-3d

Last released May 16, 2022

Connected components on 2D and 3D images. Supports multiple labels.

igneous-pipeline

Last released May 15, 2022

Downsample, Mesh, Skeletonize, and Remap Neuroglancer Datasets

cloud-volume

Last released May 12, 2022

A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.

zmesh

Last released Apr 15, 2022

Multilabel marching cubes and simplification of volumetric data.

cloud-files

Last released Apr 14, 2022

Fast access to cloud storage and local FS.

DracoPy

Last released Apr 10, 2022

Python wrapper for Google's Draco Mesh Compression Library

kimimaro

Last released Mar 24, 2022

Skeletonize densely labeled image volumes.

compressed-segmentation

Last released Mar 16, 2022

Neuroglancer compressed_segmentation codec.

tinybrain

Last released Mar 5, 2022

Image pyramid generation specialized for connectomics data types and procedures.

pyspng-seunglab

Last released Feb 23, 2022

Fast libspng-based PNG decoder. Fork of pyspng.

fpzip

Last released Feb 18, 2022

Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)

compresso

Last released Jan 25, 2022

compresso algorithm variant based on work by Matejek et al.

task-queue

Last released Jan 6, 2022

Multithreaded cloud queue client.

mapbuffer

Last released Nov 16, 2021

Serializable map of integers to bytes with near zero parsing.

dijkstra3d

Last released Aug 31, 2021

Implementation of Dijkstra's Shortest Path algorithm on 3D images.

fill-voids

Last released Jul 14, 2021

Fill voids in 3D binary images fast.

fastremap

Last released May 28, 2021

Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

contact-points

Last released Apr 2, 2021

Find contact points in a 3D Volume.