cloud-volume

Last released on Dec 4, 2019

A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.

compresso

Last released on Nov 26, 2019

Unofficial packaging of the compresso algorithm based on work by Matejek et al.

connected-components-3d

Last released on Nov 21, 2019

Connected components on 3D images, supports multiple labels.

kimimaro

Last released on Nov 20, 2019

Skeletonize densely labeled image volumes.

task-queue

Last released on Nov 15, 2019

Multithreaded cloud queue client.

fastremap

Last released on Oct 23, 2019

Remap, mask, renumber, and in-place transpose numpy arrays.

dijkstra3d

Last released on Jul 18, 2019

Implementation of Dijkstra's Shortest Path algorithm on 3D images.

zmesh

Last released on Jul 7, 2019

Multilabel marching cubes and simplification of volumetric data.

fpzip

Last released on Jun 28, 2019

Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)

tinybrain

Last released on Jun 11, 2019

Image pyramid generation specialized for connectomics data types and procedures.

edt

Last released on May 15, 2019

Multi-Label Anisotropic Euclidean Distance Transform 3D

compressed-segmentation

Last released on Nov 13, 2018

Neuroglancer compressed_segmentation codec.