23 projects
igneous-pipeline
Downsample, Mesh, Skeletonize, and Remap Neuroglancer Datasets
zmesh
Multilabel marching cubes and simplification of volumetric data.
cloud-volume
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.
cloud-files
Fast access to cloud storage and local FS.
task-queue
Multithreaded cloud queue client.
fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
connected-components-3d
Connected components on 2D and 3D images. Supports multiple labels.
fpzip
Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)
microviewer
Visualize 3D numpy arrays in the browser.
crackle-codec
Crackle 3D dense segmentation compression codec.
mapbuffer
Serializable map of integers to bytes with near zero parsing.
fill-voids
Fill voids in 3D binary images fast.
tinybrain
Image pyramid generation specialized for connectomics data types and procedures.
dijkstra3d
Implementation of Dijkstra's Shortest Path algorithm on 3D images.
compressed-segmentation
Neuroglancer compressed_segmentation codec.
edt
Multi-Label Anisotropic Euclidean Distance Transform 3D
compresso
compresso algorithm variant based on work by Matejek et al.
DracoPy
Python wrapper for Google's Draco Mesh Compression Library
kimimaro
Skeletonize densely labeled image volumes.
shard-computer
A library for rapid computation of Neuroglancer Precomputed shard hashes.
zfpc
zfp container (zfpc) for optimal compression of 1D-4D arrays by representing correlated dimensions as separate zfp streams.
pyspng-seunglab
Fast libspng-based PNG decoder. Fork of pyspng.
contact-points
Find contact points in a 3D Volume.
