15 projects
connected-components-3d
Connected components on 2D and 3D images. Supports multiple labels.
tinybrain
Image pyramid generation specialized for connectomics data types and procedures.
dijkstra3d
Implementation of Dijkstra's Shortest Path algorithm on 3D images.
cloud-files
Fast access to cloud storage and local FS.
task-queue
Multithreaded cloud queue client.
cloud-volume
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on cloud services.
mapbuffer
Serializable map of integers to bytes with near zero parsing.
edt
Multi-Label Anisotropic Euclidean Distance Transform 3D
fill-voids
Fill voids in 3D binary images fast.
fastremap
Remap, mask, renumber, and in-place transpose numpy arrays.
kimimaro
Skeletonize densely labeled image volumes.
compressed-segmentation
Neuroglancer compressed_segmentation codec.
compresso
Unofficial packaging of the compresso algorithm based on work by Matejek et al.
zmesh
Multilabel marching cubes and simplification of volumetric data.
fpzip
Numpy wrapper for fpzip algorithm (P. Lindstrom & M. Isenburg, 2006)
