17 projects
crest4
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
seqsearch
Sequence similarity searches (e.g. BLAST) made easy.
fasta
The fasta python package enables you to deal with biological sequence files easily.
optmagic
Automatically make a command line interface from a python class or function.
plumbing
Helps with plumbing-type programing in python.
autopaths
autopaths is a python package for dealing with file paths and automation.
waste-flow
A package for retrieving data concerning waste management on the European continent.
pacmill
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data.
forest-puller
A package for retrieving data concerning forests on the European continent.
pymarktex
Will convert a markdown text file to a fancy PDF document
pbs3
pbs3 is a python package for launching external processes easily.
cbm-explorer
A package for exploring the results of a CBM run and the corresponding Access databases.
cbm-runner
cbm_runner is a python package for running carbon budget simulations.
seqenv
Assign environment ontology (EnvO) terms to DNA sequences
parallelblast
Parallelize BLAST searches by splitting the input
genomes
Access to genomic assemblies meta data
track
Python package for reading and writing genomic data
