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17 projects

crest4

Last released

The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.

plumbing

Last released

Helps with plumbing-type programing in python.

autopaths

Last released

autopaths is a python package for dealing with file paths and automation.

waste-flow

Last released

A package for retrieving data concerning waste management on the European continent.

pacmill

Last released

The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data.

seqsearch

Last released

Sequence similarity searches (e.g. BLAST) made easy.

fasta

Last released

The fasta python package enables you to deal with biological sequence files easily.

optmagic

Last released

Automatically make a command line interface from a python class or function.

forest-puller

Last released

A package for retrieving data concerning forests on the European continent.

pymarktex

Last released

Will convert a markdown text file to a fancy PDF document

pbs3

Last released

pbs3 is a python package for launching external processes easily.

cbm-explorer

Last released

A package for exploring the results of a CBM run and the corresponding Access databases.

cbm-runner

Last released

cbm_runner is a python package for running carbon budget simulations.

seqenv

Last released

Assign environment ontology (EnvO) terms to DNA sequences

parallelblast

Last released

Parallelize BLAST searches by splitting the input

genomes

Last released

Access to genomic assemblies meta data

track

Last released

Python package for reading and writing genomic data

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