7 projects
snaketools
Small library of helper tools for setting up, graphing, and working with Snakemake rules.
table-enforcer
ORM-like package for defining, loading, and validating table schemas in pandas.
coordinator-data-tasks
A python-based command line utility to automate some of the most common data tasks faced by the Clinical Coordinators.
easygv
Define nodes and edges in an excel file and graph-style attributes in a yaml file with inheritence.
extract_genome_region
Given a CSV file of variable information defining the regions of interest, return a file that contains a fasta-formatted representation of these regions.
gfunc
[coming soon] gFunc: functional genomics using graphs for integration of many Omics data types
blacktie
A python wrapper for analysis of RNA-seq data with the popular tophat/cufflinks pipeline.
