Zhemin Zhou

SRAdownload

Last released May 31, 2022

downloads SRA short reads from either NCBI or EBI and converts them into fastq.gz files

pHierCC

Last released Dec 25, 2021

Hierarchical Clustering of cgMLST profiles

HierCC

Last released Feb 27, 2021

Hierarchical Clustering of cgMLST profiles

PEPPAN

Last released Jul 17, 2020

Phylogeny Enhanded Prediction of PAN-genome https://doi.org/10.1101/2020.01.03.894154

BIO-PEPPA

Last released Jun 4, 2020

Phylogeny Enhanded Prediction of PAn-genome https://doi.org/10.1101/2020.01.03.894154

fastSource

Last released May 3, 2020

Automatic classification of Source Metadata.

grapetree

Last released Apr 22, 2020

Web interface of GrapeTree, which is a program for phylogenetic analysis.

meta-sparse

Last released Dec 21, 2018

SPARSE indexes reference genomes in public databases into hierarchical clusters and uses it to predict origins of metagenomic reads.