30 projects
orgdb
Access OrgDB annotations
txdb
Python interface to access and manipulate genome annotations in TxDB SQLite format.
biostrings
Efficient manipulation of genomic sequences
experimenthub
Access Bioconductors experimenthub resources
ensembldb
Access EnsemblDb resources from Bioconductors AnnotationHub
wobbegong
Range-request ready format for Bioconductor objects
BiocFrame
Flexible dataframe representation to support nested structures.
BiocPy
Interface to all [BiocPy](https://github.com/BiocPy) packages
DelayedArray
Delayed array operations from Bioconductor
BiocGenerics
Generics for core data structures in biocpy
FileBackedArray
File backed objects for array and matrix like data
GenomicRanges
Container class to represent and operate over genomic regions and annotations.
IRanges
Python implementation of the [**IRanges**](https://bioconductor.org/packages/IRanges) Bioconductor package.
MultiAssayExperiment
Container class for representing and managing multi-omics genomic experiments
SingleCellExperiment
Container class for single-cell experiments
SpatialFeatureExperiment
Container class for storing data from spatial feature experiments
SummarizedExperiment
Container to represent data from genomic experiments
bioRAT
Bioinformatics random utilities and tools.
biocsetup
"A CLI interface to quickly scaffold new BiocPy Python packages"
biocutils
Utilities to use across the biocpy packages.
compressed-lists
Memory-efficient container for list-like objects
hdf5array
HDF5-backed objects for array and matrix like data
mopsy
Matrix operations for numpy and scipy
rds2py
Parse and construct Python representations for datasets stored in RDS files
tiledbarray
TileDb backed objects for array and matrix like data
pyBiocFileCache
File based cache for resources and metadata
scrnaseq
Collection of Public Single-Cell RNA-Seq Datasets
assorthead
Assorted C++ headers
cpptypes
Automatically creates the C++ and Python-side wrappers for ctypes bindings.
SpatialExperiment
Container class for storing data from spatial-omics experiments
