30 projects
assorthead
Assorted C++ headers
biocutils
Utilities to use across the biocpy packages.
SpatialFeatureExperiment
Container class for storing data from spatial feature experiments
experimenthub
Access Bioconductors experimenthub resources
BiocPy
Interface to all [BiocPy](https://github.com/BiocPy) packages
bioRAT
Bioinformatics random utilities and tools.
biocsetup
"A CLI interface to quickly scaffold new BiocPy Python packages"
SpatialExperiment
Container class for storing data from spatial-omics experiments
SingleCellExperiment
Container class for single-cell experiments
pyBiocFileCache
File based cache for resources and metadata
tiledbarray
TileDb backed objects for array and matrix like data
compressed-lists
Memory-efficient container for list-like objects
IRanges
Python implementation of the [**IRanges**](https://bioconductor.org/packages/IRanges) Bioconductor package.
txdb
Python interface to access and manipulate genome annotations in TxDB SQLite format.
scrnaseq
Collection of Public Single-Cell RNA-Seq Datasets
BiocFrame
Flexible dataframe representation to support nested structures.
hdf5array
HDF5-backed objects for array and matrix like data
FileBackedArray
File backed objects for array and matrix like data
cpptypes
Automatically creates the C++ and Python-side wrappers for ctypes bindings.
mopsy
Matrix operations for numpy and scipy
orgdb
Access OrgDB annotations
rds2py
Parse and save Python objects as **RDS or RData** files
BiocGenerics
Generics for core data structures in biocpy
GenomicRanges
Container class to represent and operate over genomic regions and annotations.
MultiAssayExperiment
Container class for representing and managing multi-omics genomic experiments
DelayedArray
Delayed array operations from Bioconductor
wobbegong
Range-request ready format for Bioconductor objects
ensembldb
Access EnsemblDb resources from Bioconductors AnnotationHub
SummarizedExperiment
Container to represent data from genomic experiments
biostrings
Efficient manipulation of genomic sequences
