14 projects
acquire-imaging
None
transcriptformer
A transformer model for gene expression data
cryoet-data-portal
API Client to facilitate the use of the CryoET Portal. For more information about the API and the project visit https://github.com/chanzuckerberg/cryoet-data-portal/
biohub-data-cli
Biohub data CLI
napari-cryoet-data-portal
List, preview, and open data from the CZII CryoET Data Portal
cellxgene-ontology-guide
Access ontology metadata used by CZ cellxgene
dca_helpers
Helper utilities for reading and writing Dynamic Cell Atlas OME-Zarr imaging data
platformics
Codegen Python GraphQL Entity Framework
cellxgene-census
API to facilitate the use of the CZ CELLxGENE Discover Census. For more information about the API and the project visit https://github.com/chanzuckerberg/cellxgene-census/
cz-benchmarks
A framework for benchmarking single-cell machine learning models
zarr-particle-tools
Subtomogram extraction from local files and the CryoET Data Portal.
cellxgene-schema
Tool for applying and validating cellxgene integration schema to single cell datasets
acquire-zarr
Performant streaming to Zarr storage, on filesystem or cloud
cellxgene
Web application for exploration of large scale scRNA-seq datasets
